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Table 3 List of filtered transcriptome sequence variants in RNA-Seq libraries from VSD-infected stems

From: Draft genome sequence of fastidious pathogen Ceratobasidium theobromae, which causes vascular-streak dieback in Theobroma cacao

RNA-Seq library No. of RNA reads in each library No. of variants (QUAL ≥ 999, DP ≥ 30, and GQ ≥ 40)
Homozygous alternate Heterozygous
SNPs INDELs SNPs INDELs
INS_19 108,224 258 39 10 0
INS_23 283,192 620 135 26 0
INS_31 888,258 1357 280 34 2
INS_57 109,242 279 37 16 4