Table 2 Domain classes and domain families defined in the default synthaser rule file
Domain class | Domain family | ||||
|---|---|---|---|---|---|
Accession | Name | PSSM ID | PSSM Length | Threshold bitscore | |
A | cd05930 | A_NRPS | 341253 | 444 | 356.838 |
pfam00501 | AMP-binding | 366135 | 361 | 184.727 | |
ACP | smart00823 | PKS_PP | 214834 | 86 | 33.3777 |
CHL00124 | acpP | 177047 | 82 | 85.8428 | |
pfam14573 | PP-binding_2 | 373139 | 96 | 112.899 | |
pfam00550 | PP-binding | 376348 | 67 | 29.814 | |
ACPS | COG0736 | AcpS | 223807 | 127 | 88.0777 |
PRK00070 | acpS | 234610 | 126 | 87.108 | |
AT | smart00827 | PKS_AT | 214838 | 298 | 201.477 |
C | cd19535 | Cyc_NRPS | 380458 | 423 | 348.324 |
cd19533 | starter-C_NRPS | 380456 | 419 | 482.254 | |
cd19538 | LCL_NRPS | 380461 | 432 | 638.54 | |
cd19531 | LCL_NRPS-like | 380454 | 427 | 287.329 | |
cd20480 | ArgR-Cyc_NRPS-like | 380470 | 406 | 714.278 | |
cd19543 | DCL_NRPS | 380465 | 423 | 420.456 | |
cd19544 | E-C_NRPS | 380466 | 413 | 476.159 | |
cd19532 | C_PKS-NRPS | 380455 | 421 | 402.605 | |
pfam00668 | Condensation | 334202 | 455 | 345.862 | |
DH | pfam14765 | PS-DH | 379688 | 291 | 132.479 |
smart00826 | PKS_DH | 214837 | 167 | 76.8814 | |
E | cd19534 | E_NRPS | 380457 | 428 | 363.495 |
ER | COG4981 | COG4981 | 227314 | 717 | 1062.53 |
smart00829 | PKS_ER | 214840 | 287 | 250.768 | |
cd05195 | enoyl_red | 176179 | 293 | 129.997 | |
cd08270 | MDR4 | 176231 | 305 | 268.471 | |
cd05282 | ETR_like | 176645 | 323 | 224.079 | |
KR | smart00822 | PKS_KR | 214833 | 180 | 83.3005 |
cd08950 | KR_fFAS_SDR_c_like | 187653 | 259 | 368.441 | |
KS | smart00825 | PKS_KS | 214836 | 298 | 241.079 |
cd00833 | PKS | 238429 | 421 | 167.35 | |
cd00829 | SCP-x_thiolase | 238425 | 375 | 147.795 | |
TIGR01833 | HMG-CoA-S_euk | 273826 | 457 | 790.507 | |
cd00751 | thiolase | 238383 | 386 | 222.354 | |
PLN02287 | PLN02287 | 215161 | 452 | 632.955 | |
PRK07314 | PRK07314 | 235987 | 411 | 601.393 | |
TIGR03150 | fabF | 274452 | 407 | 525.512 | |
COG0304 | FabB | 223381 | 412 | 152.8 | |
cd00832 | CLF | 238428 | 399 | 503.431 | |
cd00834 | KAS_I_II | 238430 | 406 | 285.201 | |
cd00831 | CHS_like | 238427 | 361 | 242.515 | |
cd00830 | KAS_III | 238426 | 320 | 212.4 | |
MT | pfam08241 | Methyltransf_11 | 369777 | 93 | 53.4302 |
pfam08242 | Methyltransf_12 | 369778 | 96 | 37.7331 | |
pfam13489 | Methyltransf_23 | 372616 | 162 | 59.7422 | |
pfam13649 | Methyltransf_25 | 379312 | 96 | 36.008 | |
pfam13847 | Methyltransf_31 | 316372 | 150 | 67.449 | |
cd02440 | AdoMet_MTases | 100107 | 107 | 29.3203 | |
smart00828 | PKS_MT | 214839 | 224 | 133.695 | |
PT | TIGR04532 | PT_fungal_PKS | 275325 | 324 | 202.466 |
SAT | pfam16073 | SAT | 374347 | 239 | 110.757 |
TE | smart00824 | PKS_TE | 214835 | 212 | 155.846 |
pfam00975 | Thioesterase | 366397 | 223 | 155.591 | |
COG0657 | Aes | 223730 | 312 | 59.5636 | |
pfam00561 | Abhydrolase_1 | 366166 | 245 | 93.3378 | |
TR | TIGR01746 | Thioester-redct | 273787 | 367 | 305.493 |
cd05235 | SDR_e1 | 187546 | 290 | 229.845 | |
cAT | pfam00755 | Carn_acyltransf | 376382 | 577 | 255.551 |