TY - BOOK AU - Ereky, K. PY - 1919 DA - 1919// TI - Biotechnologie der Fleisch-, Fett-, und Milcherzeugung im landwirtschaftlichen Grossbetriebe: für naturwissenschaftlich gebildete Landwirte verfasst PB - Paul Parey CY - Berlin ID - Ereky1919 ER - TY - JOUR AU - Cairns, T. C. AU - Nai, C. AU - Meyer, V. PY - 2018 DA - 2018// TI - How a fungus shapes biotechnology: 100 years of Aspergillus niger research JO - Fungal Biol Biotechnol VL - 5 UR - https://doi.org/10.1186/s40694-018-0054-5 DO - 10.1186/s40694-018-0054-5 ID - Cairns2018 ER - TY - STD TI - Citric Acid Market worth 3.6 Billion USD by 2020. Markets and markets. 2015. https://www.marketsandmarkets.com/PressReleases/citric-acid.asp. Accessed 3 Jan 2020. UR - https://www.marketsandmarkets.com/PressReleases/citric-acid.asp ID - ref3 ER - TY - JOUR AU - Meyer, V. AU - Andersen, M. R. AU - Brakhage, A. A. AU - Braus, G. H. AU - Caddick, M. X. AU - Cairns, T. C. PY - 2016 DA - 2016// TI - Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper JO - Fungal Biol Biotechnol. VL - 3 UR - https://doi.org/10.1186/s40694-016-0024-8 DO - 10.1186/s40694-016-0024-8 ID - Meyer2016 ER - TY - STD TI - Bayer E. The mycelium revolution is upon us. Scientific American. 1 July 2019. https://blogs.scientificamerican.com/observations/the-mycelium-revolution-is-upon-us/. Accessed 20 Feb 2020. UR - https://blogs.scientificamerican.com/observations/the-mycelium-revolution-is-upon-us/ ID - ref5 ER - TY - JOUR AU - Hyde, K. D. AU - Xu, J. AU - Rapior, S. AU - Jeewon, R. AU - Lumyong, S. AU - Niego, A. G. T. PY - 2019 DA - 2019// TI - The amazing potential of fungi: 50 ways we can exploit fungi industrially JO - Fungal Divers. VL - 97 UR - https://doi.org/10.1007/s13225-019-00430-9 DO - 10.1007/s13225-019-00430-9 ID - Hyde2019 ER - TY - JOUR AU - Smith, M. L. AU - Bruhn, J. N. AU - Anderson, J. B. PY - 1992 DA - 1992// TI - The fungus Armillaria bulbosa is among the largest and oldest living organisms JO - Nature VL - 356 UR - https://doi.org/10.1038/356428a0 DO - 10.1038/356428a0 ID - Smith1992 ER - TY - JOUR AU - Pelkmans, J. F. AU - Patil, M. B. AU - Gehrmann, T. AU - Reinders, M. J. AU - Wösten, H. A. AU - Lugones, L. G. PY - 2017 DA - 2017// TI - Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth JO - Sci Rep. VL - 7 UR - https://doi.org/10.1038/s41598-017-00483-3 DO - 10.1038/s41598-017-00483-3 ID - Pelkmans2017 ER - TY - JOUR AU - Spatafora, J. W. AU - Aime, M. C. AU - Grigoriev, I. V. AU - Martin, F. AU - Stajich, J. E. AU - Blackwell, M. PY - 2017 DA - 2017// TI - The fungal tree of life: from molecular systematics to genome-scale phylogenies JO - Microbiol Spectr. UR - https://doi.org/10.1128/microbiolspec.funk-0053-2016 DO - 10.1128/microbiolspec.funk-0053-2016 ID - Spatafora2017 ER - TY - JOUR AU - Bar-On, Y. M. AU - Phillips, R. AU - Milo, R. PY - 2018 DA - 2018// TI - The biomass distribution on Earth JO - Proc Natl Acad Sci USA VL - 115 UR - https://doi.org/10.1073/pnas.1711842115 DO - 10.1073/pnas.1711842115 ID - Bar-On2018 ER - TY - JOUR AU - Cherry, J. R. AU - Fidantsef, A. L. PY - 2003 DA - 2003// TI - Directed evolution of industrial enzymes: an update JO - Curr Opin Biotechnol VL - 14 UR - https://doi.org/10.1016/S0958-1669(03)00099-5 DO - 10.1016/S0958-1669(03)00099-5 ID - Cherry2003 ER - TY - JOUR AU - Brink, J. AU - Vries, R. P. PY - 2011 DA - 2011// TI - Fungal enzyme sets for plant polysaccharide degradation JO - Appl Microbiol Biotechnol VL - 91 UR - https://doi.org/10.1007/s00253-011-3473-2 DO - 10.1007/s00253-011-3473-2 ID - Brink2011 ER - TY - STD TI - Meyer V. Metabolic engineering of filamentous fungi. In: Lee, Nilesen, Stephanopoulos, editors. Metabolic engineering. Concepts and applications. Wiley, in press; 2020. ID - ref13 ER - TY - JOUR AU - Berg, M. A. AU - Albang, R. AU - Albermann, K. AU - Badger, J. H. AU - Daran, J. M. AU - Driessen, A. J. PY - 2008 DA - 2008// TI - Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum JO - Nat Biotechnol VL - 26 UR - https://doi.org/10.1038/nbt.1498 DO - 10.1038/nbt.1498 ID - Berg2008 ER - TY - JOUR AU - Houbraken, J. AU - Frisvad, J. C. AU - Samson, R. A. PY - 2011 DA - 2011// TI - Fleming’s penicillin producing strain is not Penicillium chrysogenum but P. rubens JO - IMA Fungus. VL - 2 UR - https://doi.org/10.5598/imafungus.2011.02.01.12 DO - 10.5598/imafungus.2011.02.01.12 ID - Houbraken2011 ER - TY - STD TI - Business Wire. FDA grants breakthrough therapy designation to Usona Institute’s psilocybin program for major depressive disorder. 22 November 2019. https://www.businesswire.com/news/home/20191122005452/en/FDA-grants-Breakthrough-Therapy-Designation-Usona-Institutes. Accessed 20 Feb 2020. UR - https://www.businesswire.com/news/home/20191122005452/en/FDA-grants-Breakthrough-Therapy-Designation-Usona-Institutes ID - ref16 ER - TY - JOUR AU - Karaffa, L. AU - Kubicek, C. P. PY - 2019 DA - 2019// TI - Citric acid and itaconic acid accumulation: variations of the same story? JO - Appl Microbiol Biotechnol VL - 103 UR - https://doi.org/10.1007/s00253-018-09607-9 DO - 10.1007/s00253-018-09607-9 ID - Karaffa2019 ER - TY - JOUR AU - Kuivanen, J. AU - Wang, Y. J. AU - Richard, P. PY - 2016 DA - 2016// TI - Engineering Aspergillus niger for galactaric acid production: elimination of galactaric acid catabolism by using RNA sequencing and CRISPR/Cas9 JO - Microb Cell Fact VL - 15 UR - https://doi.org/10.1186/s12934-016-0613-5 DO - 10.1186/s12934-016-0613-5 ID - Kuivanen2016 ER - TY - JOUR AU - Dai, Z. AU - Zhou, H. AU - Zhang, S. AU - Gu, H. AU - Yang, Q. AU - Zhang, W. PY - 2018 DA - 2018// TI - Current advance in biological production of malic acid using wild type and metabolic engineered strains JO - Bioresour Technol VL - 258 UR - https://doi.org/10.1016/j.biortech.2018.03.001 DO - 10.1016/j.biortech.2018.03.001 ID - Dai2018 ER - TY - JOUR AU - Liu, J. AU - Li, J. AU - Shin, H. D. AU - Du, G. AU - Chen, J. AU - Liu, L. PY - 2017 DA - 2017// TI - Biological production of L-malate: recent advances and future prospects JO - World J Microbiol Biotechnol VL - 34 UR - https://doi.org/10.1007/s11274-017-2349-8 DO - 10.1007/s11274-017-2349-8 ID - Liu2017 ER - TY - JOUR AU - Teleky, B. E. AU - Vodnar, D. C. PY - 2019 DA - 2019// TI - Biomass-derived production of itaconic acid as a building block in specialty polymers JO - Polymers (Basel). VL - 11 UR - https://doi.org/10.3390/polym11061035 DO - 10.3390/polym11061035 ID - Teleky2019 ER - TY - STD TI - Junod SW. Statins: a success story involving FDA, academia and industry. Food and Drug Administration. The article originally appeared in the “History Corner” column of the March–April 2007 issue of Update magazine. https://www.fda.gov/media/110452/download. Accessed 25 Sept 2019. UR - https://www.fda.gov/media/110452/download ID - ref22 ER - TY - JOUR AU - Barrios-González, J. AU - Miranda, R. U. PY - 2010 DA - 2010// TI - Biotechnological production and applications of statins JO - Appl Microbiol Biotechnol VL - 85 UR - https://doi.org/10.1007/s00253-009-2239-6 DO - 10.1007/s00253-009-2239-6 ID - Barrios-González2010 ER - TY - JOUR AU - Liang, B. AU - Huang, X. AU - Teng, Y. AU - Liang, Y. AU - Yang, Y. AU - Zheng, L. PY - 2018 DA - 2018// TI - Enhanced single-step bioproduction of the simvastatin precursor monacolin J in an industrial strain of Aspergillus terreus by employing the evolved lovastatin hydrolase JO - Biotechnol J VL - 13 UR - https://doi.org/10.1002/biot.201800094 DO - 10.1002/biot.201800094 ID - Liang2018 ER - TY - JOUR AU - Huang, X. AU - Tang, S. AU - Zheng, L. AU - Teng, Y. AU - Yang, Y. AU - Zhu, J. PY - 2019 DA - 2019// TI - Construction of an efficient and robust Aspergillus terreus cell factory for monacolin J production JO - ACS Synth Biol. VL - 8 UR - https://doi.org/10.1021/acssynbio.8b00489 DO - 10.1021/acssynbio.8b00489 ID - Huang2019 ER - TY - JOUR AU - Berg, M. A. PY - 2011 DA - 2011// TI - Impact of the Penicillium chrysogenum genome on industrial production of metabolites JO - Appl Microbiol Biotechnol VL - 92 UR - https://doi.org/10.1007/s00253-011-3476-z DO - 10.1007/s00253-011-3476-z ID - Berg2011 ER - TY - JOUR AU - McLean, K. J. AU - Hans, M. AU - Meijrink, B. AU - Scheppingen, W. B. AU - Vollebregt, A. AU - Tee, K. L. PY - 2015 DA - 2015// TI - Single-step fermentative production of the cholesterol-lowering drug pravastatin via reprogramming of Penicillium chrysogenum JO - Proc Natl Acad Sci USA VL - 112 UR - https://doi.org/10.1073/pnas.1419028112 DO - 10.1073/pnas.1419028112 ID - McLean2015 ER - TY - JOUR AU - Blumer-Schuette, S. E. AU - Brown, S. D. AU - Sander, K. B. AU - Bayer, E. A. AU - Kataeva, I. AU - Zurawski, J. V. PY - 2014 DA - 2014// TI - Thermophilic lignocellulose deconstruction JO - FEMS Microbiol Rev VL - 38 UR - https://doi.org/10.1111/1574-6976.12044 DO - 10.1111/1574-6976.12044 ID - Blumer-Schuette2014 ER - TY - JOUR AU - Burdette, L. A. AU - Leach, S. A. AU - Wong, H. T. AU - Tullman-Ercek, D. PY - 2018 DA - 2018// TI - Developing Gram-negative bacteria for the secretion of heterologous proteins JO - Microb Cell Fact VL - 17 UR - https://doi.org/10.1186/s12934-018-1041-5 DO - 10.1186/s12934-018-1041-5 ID - Burdette2018 ER - TY - JOUR AU - Hou, J. AU - Tyo, K. E. AU - Liu, Z. AU - Petranovic, D. AU - Nielsen, J. PY - 2012 DA - 2012// TI - Metabolic engineering of recombinant protein secretion by Saccharomyces cerevisiae JO - FEMS Yeast Res VL - 12 UR - https://doi.org/10.1111/j.1567-1364.2012.00810.x DO - 10.1111/j.1567-1364.2012.00810.x ID - Hou2012 ER - TY - JOUR AU - Zhou, Y. AU - Raju, R. AU - Alves, C. AU - Gilbert, A. PY - 2018 DA - 2018// TI - Debottlenecking protein secretion and reducing protein aggregation in the cellular host JO - Curr Opin Biotechnol VL - 53 UR - https://doi.org/10.1016/j.copbio.2018.01.007 DO - 10.1016/j.copbio.2018.01.007 ID - Zhou2018 ER - TY - JOUR AU - Ilica, R. A. AU - Kloetzer, L. AU - Galaction, A. I. AU - Caşcaval, D. PY - 2019 DA - 2019// TI - Fumaric acid: production and separation JO - Biotechnol Lett VL - 41 UR - https://doi.org/10.1007/s10529-018-2628-y DO - 10.1007/s10529-018-2628-y ID - Ilica2019 ER - TY - JOUR AU - Li, J. AU - Lin, L. AU - Sun, T. AU - Xu, J. AU - Ji, J. AU - Liu, Q. PY - 2019 DA - 2019// TI - Direct production of commodity chemicals from lignocellulose using Myceliophthora thermophila JO - Metab Eng UR - https://doi.org/10.1016/j.ymben.2019.05.007 DO - 10.1016/j.ymben.2019.05.007 ID - Li2019 ER - TY - STD TI - Dyadic International Inc. C1 expression system. https://www.dyadic.com/c1-technology/c1-expression-system/. Accessed 3 Jan 2020. UR - https://www.dyadic.com/c1-technology/c1-expression-system/ ID - ref34 ER - TY - CHAP AU - Moore, D. AU - Chiu, S. W. ED - Pointing, S. B. ED - Hyde, K. D. PY - 2001 DA - 2001// TI - Fungal products as food BT - Bio-exploitation of filamentous fungi PB - Fungal Diversity Press CY - London ID - Moore2001 ER - TY - STD TI - Mycorena. Creating green protein with no plants. https://mycorena.com/. Accessed 20 Feb 2020. UR - https://mycorena.com/ ID - ref36 ER - TY - STD TI - Sustainable Bioproducts. https://www.sustainablebioproducts.com/. Accessed 20 Feb 2020. UR - https://www.sustainablebioproducts.com/ ID - ref37 ER - TY - STD TI - MycoTechnology. How mushrooms are transforming the food industry. http://redesign.mycotechcorp.com/. Accessed 20 Feb 2020. UR - http://redesign.mycotechcorp.com/ ID - ref38 ER - TY - JOUR AU - Finnigan, T. J. A. AU - Wall, B. T. AU - Wilde, P. J. AU - Stephens, F. B. AU - Taylor, S. L. AU - Freedman, M. R. PY - 2019 DA - 2019// TI - Mycoprotein: the future of nutritious nonmeat protein, a symposium review JO - Curr Dev Nutr. VL - 3 UR - https://doi.org/10.1093/cdn/nzz021 DO - 10.1093/cdn/nzz021 ID - Finnigan2019 ER - TY - STD TI - Carbon Trust. Quorn—product carbon footprinting and labelling. https://www.carbontrust.com/our-clients/q/quorn-product-carbon-footprinting-and-labeling/. Accessed 20 Feb 2020. UR - https://www.carbontrust.com/our-clients/q/quorn-product-carbon-footprinting-and-labeling/ ID - ref40 ER - TY - JOUR AU - Merzendorfer, H. PY - 2011 DA - 2011// TI - The cellular basis of chitin synthesis in fungi and insects: common principles and differences JO - Eur J Cell Biol VL - 90 UR - https://doi.org/10.1016/j.ejcb.2011.04.014 DO - 10.1016/j.ejcb.2011.04.014 ID - Merzendorfer2011 ER - TY - JOUR AU - Grimm, D. AU - Wösten, H. A. B. PY - 2018 DA - 2018// TI - Mushroom cultivation in the circular economy JO - Appl Microbiol Biotechnol VL - 102 UR - https://doi.org/10.1007/s00253-018-9226-8 DO - 10.1007/s00253-018-9226-8 ID - Grimm2018 ER - TY - JOUR AU - Islam, M. R. AU - Tudryn, G. AU - Bucinell, R. AU - Schadler, L. AU - Picu, R. C. PY - 2018 DA - 2018// TI - Mechanical behavior of mycelium-based particulate composites JO - J Mater Sci VL - 53 UR - https://doi.org/10.1007/s10853-018-2797-z DO - 10.1007/s10853-018-2797-z ID - Islam2018 ER - TY - JOUR AU - Pelletier, M. G. AU - Holt, G. A. AU - Wanjura, J. D. AU - Lara, A. J. AU - Tapia-Carillo, A. AU - McIntyre, G. PY - 2013 DA - 2013// TI - An evaluation study of pressure-compressed acoustic absorbers grown on agricultural by-products JO - Ind Crops Prod VL - 95 UR - https://doi.org/10.1016/j.indcrop.2016.10.042 DO - 10.1016/j.indcrop.2016.10.042 ID - Pelletier2013 ER - TY - JOUR AU - Appels, F. V. W. AU - Camere, S. AU - Montalti, M. AU - Karana, E. AU - Jansen, K. M. B. AU - Dijksterhuis, J. PY - 2019 DA - 2019// TI - Fabrication factors influencing mechanical, moisture- and water-related properties of mycelium-based composites JO - Mater Des VL - 161 UR - https://doi.org/10.1016/j.matdes.2018.11.027 DO - 10.1016/j.matdes.2018.11.027 ID - Appels2019 ER - TY - JOUR AU - Attias, N. AU - Danai, O. AU - Abitbol, T. AU - Tarazi, E. AU - Ezov, N. AU - Pereman, I. PY - 2020 DA - 2020// TI - Mycelium bio-composites in industrial design and architecture: comparative review and experimental design JO - J Clean Prod. VL - 246 UR - https://doi.org/10.1016/j.jclepro.2019.119037 DO - 10.1016/j.jclepro.2019.119037 ID - Attias2020 ER - TY - JOUR AU - Appels, F. V. W. AU - Dijksterhuis, J. AU - Lukasiewicz, C. E. AU - Jansen, K. M. B. AU - Wösten, H. A. B. AU - Krijgsheld, P. PY - 2018 DA - 2018// TI - Hydrophobin gene deletion and environmental growth conditions impact mechanical properties of mycelium by affecting the density of the material JO - Sci. Rep. VL - 8 UR - https://doi.org/10.1038/s41598-018-23171-2 DO - 10.1038/s41598-018-23171-2 ID - Appels2018 ER - TY - JOUR AU - Nai, C. AU - Meyer, V. PY - 2016 DA - 2016// TI - The beauty and the morbid: fungi as source of inspiration in contemporary art JO - Fungal Biol Biotechnol. VL - 3 UR - https://doi.org/10.1186/s40694-016-0028-4 DO - 10.1186/s40694-016-0028-4 ID - Nai2016 ER - TY - JOUR AU - Meyer, V. PY - 2019 DA - 2019// TI - Merging science and art through fungi JO - Fungal Biol Biotechnol. VL - 6 UR - https://doi.org/10.1186/s40694-019-0068-7 DO - 10.1186/s40694-019-0068-7 ID - Meyer2019 ER - TY - STD TI - Mycoworks. Reishi. https://www.mycoworks.com/. Accessed 20 Feb 2020. UR - https://www.mycoworks.com/ ID - ref50 ER - TY - STD TI - Ecovative Design. https://ecovativedesign.com/. Accessed 20 Feb 2020. UR - https://ecovativedesign.com/ ID - ref51 ER - TY - STD TI - Neffa. https://neffa.nl/. Accessed 20 Feb 2020. UR - https://neffa.nl/ ID - ref52 ER - TY - STD TI - Mogu. https://mogu.bio/. Accessed 20 Feb 2020. UR - https://mogu.bio/ ID - ref53 ER - TY - JOUR AU - Pelletier, M. G. AU - Holt, G. A. AU - Wanjura, J. D. AU - Grettham, L. AU - McIntyre, G. AU - Bayer, E. PY - 2019 DA - 2019// TI - Acoustic evaluation of mycological biopolymer, an all-natural closed cell foam alternative JO - Ind Crops Prod VL - 139 UR - https://doi.org/10.1016/j.indcrop.2019.111533 DO - 10.1016/j.indcrop.2019.111533 ID - Pelletier2019 ER - TY - JOUR AU - Jones, M. AU - Bhat, T. AU - Kandare, E. AU - Thomas, A. AU - Joseph, P. AU - Dekiwadia, C. PY - 2018 DA - 2018// TI - Thermal degradation and fire properties of fungal mycelium and mycelium—biomass composite materials JO - Sci Rep. VL - 8 UR - https://doi.org/10.1038/s41598-018-36032-9 DO - 10.1038/s41598-018-36032-9 ID - Jones2018 ER - TY - STD TI - WBAE/WBW: Scientific Advisory Board on Agricultural Policy, Food and Consumer Health Protection (WBAE) and on Forest Policy (WBW) at the Federal Ministry of Food and Agriculture (BMEL). In: (2016) Climate change mitigation in agriculture and forestry and in the downstream sectors of food and timber use. Executive Summary. Berlin; 2016. https://doi.org/10.12767/buel.v1i1.175.g323. ID - ref56 ER - TY - STD TI - Nabuurs GJ, Verkerk PJ, Schelhaas MJ, Olabarria JRG, Trasobares A, Cienciala E. Climate-smart forestry: mitigation impacts in three European regions. From Science to Policy 6. European Forest Institute; 2018. ID - ref57 ER - TY - STD TI - Von Carlowitz HC. Sylvicultura oeconomica oder Haußwirthliche Nachricht und Naturmäßige Anweisung zur Wilden Baum-Zucht. Hamberger J, editor. Oekom verlag; 2013 [1713]. ID - ref58 ER - TY - STD TI - Forest Europe. State of Europe’s Forests 2015. Ministerial Conference on the Protection of Forests in Europe. Forest Europe Liaison Unit Madrid. 2015. https://foresteurope.org/state-europes-forests-2015-report/. Accessed 21 Feb 2020. UR - https://foresteurope.org/state-europes-forests-2015-report/ ID - ref59 ER - TY - STD TI - EASAC—European Academies’ Science Advisory Council. Multi-functionality and sustainability in the European Union’s forests. EASAC policy report 32. 2017. https://easac.eu/publications/details/multi-functionality-and-sustainability-in-the-european-unions-forests/. Accessed 21 Feb 2020. UR - https://easac.eu/publications/details/multi-functionality-and-sustainability-in-the-european-unions-forests/ ID - ref60 ER - TY - JOUR AU - Höglmeier, K. AU - Weber-Blaschke, G. AU - Richter, K. PY - 2017 DA - 2017// TI - Potentials for cascading of recovered wood from building deconstruction—a case study for south-east Germany JO - Resour Conserv Recy. VL - 117 UR - https://doi.org/10.1016/j.resconrec.2015.10.030 DO - 10.1016/j.resconrec.2015.10.030 ID - Höglmeier2017 ER - TY - JOUR AU - Lange, L. PY - 2017 DA - 2017// TI - Fungal enzymes and yeasts for conversion of plant biomass to bioenergy and high-value products JO - Microbiol Spectr. UR - https://doi.org/10.1128/microbiolspec.funk-0007-2016 DO - 10.1128/microbiolspec.funk-0007-2016 ID - Lange2017 ER - TY - JOUR AU - Ragauskas, A. J. AU - Beckham, G. T. AU - Biddy, M. J. AU - Chandra, R. AU - Chen, F. AU - Davis, M. F. PY - 2014 DA - 2014// TI - Lignin valorization: improving lignin processing in the biorefinery JO - Science VL - 344 UR - https://doi.org/10.1126/science.1246843 DO - 10.1126/science.1246843 ID - Ragauskas2014 ER - TY - BOOK PY - 2014 DA - 2014// TI - Future of the European forest-based sector: structural changes towards bioeconomy PB - Joensuu CY - European Forest Institute ID - ref64 ER - TY - STD TI - Bio-based Industries Consortium & nova-Institut GmbH. Biorefineries in Europe 2017. https://biconsortium.eu/downloads/biorefineries-europe-2017. Accessed 21 Feb 2020. UR - https://biconsortium.eu/downloads/biorefineries-europe-2017 ID - ref65 ER - TY - JOUR AU - Yaegashi, J. AU - Kirby, J. AU - Ito, M. AU - Sun, J. AU - Dutta, T. AU - Mirsiaghi, M. PY - 2017 DA - 2017// TI - Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts JO - Biotechnol Biofuels VL - 10 UR - https://doi.org/10.1186/s13068-017-0927-5 DO - 10.1186/s13068-017-0927-5 ID - Yaegashi2017 ER - TY - JOUR AU - Hassan, L. AU - Reppke, M. J. AU - Thieme, N. AU - Schweizer, S. A. AU - Mueller, C. W. AU - Benz, J. P. PY - 2017 DA - 2017// TI - Comparing the physiochemical parameters of three celluloses reveals new insights into substrate suitability for fungal enzyme production JO - Fungal Biol Biotechnol. VL - 4 UR - https://doi.org/10.1186/s40694-017-0039-9 DO - 10.1186/s40694-017-0039-9 ID - Hassan2017 ER - TY - JOUR AU - Novy, V. AU - Nielsen, F. AU - Seiboth, B. AU - Nidetzky, B. PY - 2019 DA - 2019// TI - The influence of feedstock characteristics on enzyme production in Trichoderma reesei: a review on productivity, gene regulation and secretion profiles JO - Biotechnol Biofuels VL - 12 UR - https://doi.org/10.1186/s13068-019-1571-z DO - 10.1186/s13068-019-1571-z ID - Novy2019 ER - TY - JOUR AU - Bajwa, D. S. AU - Pourhashem, G. AU - Ullah, A. H. AU - Bajwa, S. G. PY - 2019 DA - 2019// TI - A concise review of current lignin production, applications, products and their environmental impact JO - Ind Crops Prod VL - 139 UR - https://doi.org/10.1016/j.indcrop.2019.111526 DO - 10.1016/j.indcrop.2019.111526 ID - Bajwa2019 ER - TY - JOUR AU - Danso, D. AU - Chow, J. AU - Streit, W. R. PY - 2019 DA - 2019// TI - Plastics: environmental and biotechnological perspectives on microbial degradation JO - Appl Environ Microbiol VL - 85 UR - https://doi.org/10.1128/AEM.01095-19 DO - 10.1128/AEM.01095-19 ID - Danso2019 ER - TY - STD TI - Plastics Europe. Association of plastics manufacturers. https://www.plasticseurope.org/. Accessed 21 Feb 2020. UR - https://www.plasticseurope.org/ ID - ref71 ER - TY - JOUR AU - Teuten, E. L. AU - Saquing, J. M. AU - Knappe, D. R. AU - Barlaz, M. A. AU - Jonsson, S. AU - Björn, A. PY - 2009 DA - 2009// TI - Transport and release of chemicals from plastics to the environment and to wildlife JO - Philos Trans R Soc Lond B Biol Sci VL - 364 UR - https://doi.org/10.1098/rstb.2008.0284 DO - 10.1098/rstb.2008.0284 ID - Teuten2009 ER - TY - JOUR AU - Gregory, M. R. PY - 2009 DA - 2009// TI - Environmental implications of plastic debris in marine settings—entanglement, ingestion, smothering, hangers-on, hitch-hiking and alien invasions JO - Philos Trans R Soc Lond B Biol Sci VL - 364 UR - https://doi.org/10.1098/rstb.2008.0265 DO - 10.1098/rstb.2008.0265 ID - Gregory2009 ER - TY - JOUR AU - Jambeck, J. R. AU - Geyer, R. AU - Wilcox, C. AU - Siegler, T. R. AU - Perryman, M. AU - Andrady, A. PY - 2015 DA - 2015// TI - Marine pollution. Plastic waste inputs from land into the ocean JO - Science VL - 347 UR - https://doi.org/10.1126/science.126035 DO - 10.1126/science.126035 ID - Jambeck2015 ER - TY - JOUR AU - Boucher, J. AU - Friot, D. PY - 2017 DA - 2017// TI - Primary microplastics in the oceans. A global evaluation of sources JO - IUCN UR - https://doi.org/10.2305/iucn.ch.2017.01.en DO - 10.2305/iucn.ch.2017.01.en ID - Boucher2017 ER - TY - JOUR AU - Novoa, C. AU - Dhoke, G. V. AU - Mate, D. M. AU - Martinez, R. AU - Haarmann, T. AU - Schreiter, M. PY - 2019 DA - 2019// TI - KnowVolution of a fungal laccase toward alkaline pH JO - ChemBioChem VL - 20 UR - https://doi.org/10.1002/cbic.201800807 DO - 10.1002/cbic.201800807 ID - Novoa2019 ER - TY - JOUR AU - Asgher, M. AU - Bhatti, H. N. AU - Ashraf, M. AU - Legge, R. L. PY - 2008 DA - 2008// TI - Recent developments in biodegradation of industrial pollutants by white rot fungi and their enzyme system JO - Biodegradation VL - 19 UR - https://doi.org/10.1007/s10532-008-9185-3 DO - 10.1007/s10532-008-9185-3 ID - Asgher2008 ER - TY - STD TI - Patent: CN103013841A Scopulariopsis brevicaulis and application thereof. https://patents.google.com/patent/CN103013841A/en. Accessed 21 Feb 2020. UR - https://patents.google.com/patent/CN103013841A/en ID - ref78 ER - TY - JOUR AU - Mao, J. AU - Guan, W. PY - 2016 DA - 2016// TI - Fungal degradation of polycyclic aromatic hydrocarbons (PAHs) by Scopulariopsis brevicaulis and its application in bioremediation of PAH-contaminated soil JO - Acta Agr Scand Sec B VL - 66 UR - https://doi.org/10.1080/09064710.2015.1137629 DO - 10.1080/09064710.2015.1137629 ID - Mao2016 ER - TY - JOUR AU - Ezekoye, C. C. AU - Chikere, C. B. AU - Okpokwasili, G. C. PY - 2018 DA - 2018// TI - Fungal diversity associated with crude oil-impacted soil undergoing in-situ bioremediation JO - Sustain Chem Pharm. VL - 10 UR - https://doi.org/10.1016/j.scp.2018.11.003 DO - 10.1016/j.scp.2018.11.003 ID - Ezekoye2018 ER - TY - JOUR AU - Pathak, V. M. PY - 2017 DA - 2017// TI - Navneet Review on the current status of polymer degradation: a microbial approach JO - Bioresour Bioprocess. VL - 4 UR - https://doi.org/10.1186/s40643-017-0145-9 DO - 10.1186/s40643-017-0145-9 ID - Pathak2017 ER - TY - JOUR AU - Bentham, R. H. AU - Morton, L. H. G. AU - Allen, N. G. PY - 1987 DA - 1987// TI - Rapid assessment of the microbial deterioration of polyurethanes JO - Int Biodeterior. VL - 23 UR - https://doi.org/10.1016/0265-3036(87)90026-1 DO - 10.1016/0265-3036(87)90026-1 ID - Bentham1987 ER - TY - JOUR AU - Ghosh, S. K. AU - Pal, S. AU - Ray, S. PY - 2013 DA - 2013// TI - Study of microbes having potentiality for biodegradation of plastics JO - Environ Sci Pollut Res Int VL - 20 UR - https://doi.org/10.1007/s11356-013-1706-x DO - 10.1007/s11356-013-1706-x ID - Ghosh2013 ER - TY - JOUR AU - Russell, J. R. AU - Huang, J. AU - Anand, P. AU - Kucera, K. AU - Sandoval, A. G. AU - Dantzler, K. W. PY - 2011 DA - 2011// TI - Biodegradation of polyester polyurethane by endophytic fungi JO - Appl Environ Microbiol VL - 77 UR - https://doi.org/10.1128/AEM.00521-11 DO - 10.1128/AEM.00521-11 ID - Russell2011 ER - TY - JOUR AU - Taylor, D. L. AU - Hollingsworth, T. N. AU - McFarland, J. W. AU - Lennon, N. J. AU - Nusbaum, C. AU - Ruess, R. W. PY - 2014 DA - 2014// TI - A first comprehensive census of fungi in soil reveals both hyperdiversity and fine-scale niche partitioning JO - Ecol Monogr VL - 84 UR - https://doi.org/10.1890/12-1693.1 DO - 10.1890/12-1693.1 ID - Taylor2014 ER - TY - JOUR AU - Fisher, M. C. AU - Hawkins, N. J. AU - Sanglard, D. AU - Gurr, S. J. PY - 2018 DA - 2018// TI - Worldwide emergence of resistance to antifungal drugs challenges human health and food security JO - Science VL - 360 UR - https://doi.org/10.1126/science.aap7999 DO - 10.1126/science.aap7999 ID - Fisher2018 ER - TY - JOUR AU - Denning, D. W. AU - Bromley, M. J. PY - 2015 DA - 2015// TI - Infectious disease. How to bolster the antifungal pipeline JO - Science VL - 347 UR - https://doi.org/10.1126/science.aaa6097 DO - 10.1126/science.aaa6097 ID - Denning2015 ER - TY - JOUR AU - Hyde, K. D. AU - Al-Hatmi, A. M. S. AU - Andersen, B. AU - Boekhout, T. AU - Buzina, W. AU - Dawson, T. J. PY - 2018 DA - 2018// TI - The world’s ten most feared fungi JO - Fungal Divers. VL - 93 UR - https://doi.org/10.1007/s13225-018-0413-9 DO - 10.1007/s13225-018-0413-9 ID - Hyde2018 ER - TY - STD TI - Konopka JB, Casadevall A, Taylor JW, Heitman J, Cowen L. One health: fungal pathogens of humans, animals, and plants. Report on an American Academy of Microbiology Colloquium held in Washington, DC, on 18 October 2017. Washington (DC): American Society for Microbiology; 2019. ID - ref89 ER - TY - STD TI - How to feed the world by 2050. FAO. http://www.fao.org/fileadmin/templates/wsfs/docs/expert_paper/How_to_Feed_the_World_in_2050.pdf. Accessed 21 Feb 2020. UR - http://www.fao.org/fileadmin/templates/wsfs/docs/expert_paper/How_to_Feed_the_World_in_2050.pdf ID - ref90 ER - TY - STD TI - Dean R, Van Kan JA, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, et al. The Top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol. 2012;13:414-30. https://doi.org/10.1111/j.1364-3703.2011.00783.x. Review. Erratum in: Mol Plant Pathol. 2012;13:804. ID - ref91 ER - TY - JOUR AU - Yorinori, J. T. AU - Paiva, W. M. AU - Frederick, R. D. AU - Costamilan, J. M. AU - Vertagnolli, P. F. AU - Hartman, G. E. PY - 2005 DA - 2005// TI - Epidemics of soybean rust (Phakopsora pachyrhizi) in Brazil and Paraguay from 2001 to 2003 JO - Plant Dis VL - 89 UR - https://doi.org/10.1094/PD-89-0675 DO - 10.1094/PD-89-0675 ID - Yorinori2005 ER - TY - JOUR AU - Savary, S. AU - Willocquet, L. AU - Pethybridge, S. J. AU - Esker, P. AU - McRoberts, N. AU - Nelson, A. PY - 2019 DA - 2019// TI - The global burden of pathogens and pests on major food crops JO - Nat Ecol Evol. VL - 3 UR - https://doi.org/10.1038/s41559-018-0793-y DO - 10.1038/s41559-018-0793-y ID - Savary2019 ER - TY - JOUR AU - Pretorius, Z. A. AU - Singh, R. P. AU - Wagoire, W. W. AU - Payne, T. S. PY - 2000 DA - 2000// TI - Detection of virulence to wheat stem rust resistance gene Sr31 in Puccinia graminis. f. sp. tritici in Uganda JO - Plant Dis VL - 84 UR - https://doi.org/10.1094/pdis.2000.84.2.203b DO - 10.1094/pdis.2000.84.2.203b ID - Pretorius2000 ER - TY - JOUR AU - Fernández-Ortuño, D. AU - Pérez-García, A. AU - Chamorro, M. AU - Peña, E. AU - Vicente, A. AU - Torés, J. A. PY - 2017 DA - 2017// TI - Resistance to the SDHI fungicides boscalid, fluopyram, fluxapyroxad, and penthiopyrad in Botrytis cinerea from commercial strawberry fields in Spain JO - Plant Dis VL - 101 UR - https://doi.org/10.1094/PDIS-01-17-0067-RE DO - 10.1094/PDIS-01-17-0067-RE ID - Fernández-Ortuño2017 ER - TY - JOUR AU - Steinhauer, D. AU - Salat, M. AU - Frey, R. AU - Mosbach, A. AU - Luksch, T. AU - Balmer, D. PY - 2019 DA - 2019// TI - A dispensable paralog of succinate dehydrogenase subunit C mediates standing resistance towards a subclass of SDHI fungicides in Zymoseptoria tritici JO - PLoS Pathog VL - 15 UR - https://doi.org/10.1371/journal.ppat.1007780 DO - 10.1371/journal.ppat.1007780 ID - Steinhauer2019 ER - TY - JOUR AU - Nishimoto, R. PY - 2019 DA - 2019// TI - Global trends in the crop protection industry JO - J Pestic Sci. VL - 44 UR - https://doi.org/10.1584/jpestics.D19-101 DO - 10.1584/jpestics.D19-101 ID - Nishimoto2019 ER - TY - JOUR AU - Ohm, R. A. AU - Feau, N. AU - Henrissat, B. AU - Schoch, C. L. AU - Horwitz, B. A. AU - Barry, K. W. PY - 2012 DA - 2012// TI - Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi JO - PLoS Pathog VL - 8 UR - https://doi.org/10.1371/journal.ppat.1003037 DO - 10.1371/journal.ppat.1003037 ID - Ohm2012 ER - TY - JOUR AU - Rodriguez-Moreno, L. AU - Ebert, M. K. AU - Bolton, M. D. AU - Thomma, B. P. PY - 2018 DA - 2018// TI - Tools of the crook—infection strategies of fungal plant pathogens JO - Plant J. VL - 93 UR - https://doi.org/10.1111/tpj.13810 DO - 10.1111/tpj.13810 ID - Rodriguez-Moreno2018 ER - TY - JOUR AU - Horbach, R. AU - Navarro-Quesada, A. R. AU - Knogge, W. AU - Deising, H. B. PY - 2011 DA - 2011// TI - When and how to kill a plant cell: infection strategies of plant pathogenic fungi JO - J Plant Physiol VL - 168 UR - https://doi.org/10.1016/j.jplph.2010.06.014 DO - 10.1016/j.jplph.2010.06.014 ID - Horbach2011 ER - TY - JOUR AU - Spraker, J. E. AU - Wiemann, P. AU - Baccile, J. A. AU - Venkatesh, N. AU - Schumacher, J. AU - Schroeder, F. C. PY - 2018 DA - 2018// TI - Conserved responses in a war of small molecules between a plant-pathogenic bacterium and fungi JO - mBio VL - 9 UR - https://doi.org/10.1128/mbio.00820-18 DO - 10.1128/mbio.00820-18 ID - Spraker2018 ER - TY - JOUR AU - Venkatesh, N. AU - Keller, N. P. PY - 2019 DA - 2019// TI - Mycotoxins in conversation with bacteria and fungi JO - Front Microbiol. VL - 10 UR - https://doi.org/10.3389/fmicb.2019.00403 DO - 10.3389/fmicb.2019.00403 ID - Venkatesh2019 ER - TY - JOUR AU - Mitchell, N. J. AU - Bowers, E. AU - Hurburgh, C. AU - Wu, F. PY - 2016 DA - 2016// TI - Potential economic loss to the US corn industry from aflatoxin contamination JO - Food Addit Contam Part A Chem Anal Control Expo Risk Assess. VL - 33 UR - https://doi.org/10.1080/19440049.2016.1138545 DO - 10.1080/19440049.2016.1138545 ID - Mitchell2016 ER - TY - STD TI - Tannous J, Keller NP. Mycotoxins. In: Carroll KC, Pfaller MA, Landry ML, McAdam AJ, Patel R, Richter SS, et al., editors. Manual of clinical microbiology. 12th Edition. ASM Press; 2019. Chapter 129. ID - ref104 ER - TY - JOUR AU - Moudgil, V. AU - Redhu, D. AU - Dhanda, S. AU - Singh, J. PY - 2013 DA - 2013// TI - A review of molecular mechanisms in the development of hepatocellular carcinoma by aflatoxin and hepatitis B and C viruses JO - J Environ Pathol Toxicol Oncol VL - 32 UR - https://doi.org/10.1615/JEnvironPatholToxicolOncol.2013007166 DO - 10.1615/JEnvironPatholToxicolOncol.2013007166 ID - Moudgil2013 ER - TY - JOUR AU - Lee, R. J. AU - Workman, A. D. AU - Carey, R. M. AU - Chen, B. AU - Rosen, P. L. AU - Doghramji, L. PY - 2016 DA - 2016// TI - Fungal aflatoxins reduce respiratory mucosal ciliary function JO - Sci Rep. VL - 6 UR - https://doi.org/10.1038/srep33221 DO - 10.1038/srep33221 ID - Lee2016 ER - TY - JOUR AU - Gratz, S. W. PY - 2017 DA - 2017// TI - Do plant-bound masked mycotoxins contribute to toxicity? JO - Toxins (Basel). VL - 9 UR - https://doi.org/10.3390/toxins9030085 DO - 10.3390/toxins9030085 ID - Gratz2017 ER - TY - JOUR AU - Fels-Klerx, H. J. AU - Vermeulen, L. C. AU - Gavai, A. K. AU - Liu, C. PY - 2019 DA - 2019// TI - Climate change impacts on aflatoxin B1 in maize and aflatoxin M1 in milk: a case study of maize grown in Eastern Europe and imported to the Netherlands JO - PLoS ONE VL - 14 UR - https://doi.org/10.1371/journal.pone.0218956 DO - 10.1371/journal.pone.0218956 ID - Fels-Klerx2019 ER - TY - JOUR AU - Assunção, R. AU - Martins, C. AU - Viegas, S. AU - Viegas, C. AU - Jakobsen, L. S. AU - Pires, S. PY - 2018 DA - 2018// TI - Climate change and the health impact of aflatoxins exposure in Portugal—an overview JO - Food Addit Contam Part A Chem Anal Control Expo Risk Assess. VL - 35 UR - https://doi.org/10.1080/19440049.2018.1447691 DO - 10.1080/19440049.2018.1447691 ID - Assunção2018 ER - TY - JOUR AU - Moretti, A. AU - Pascale, M. AU - Logrieco, A. F. PY - 2019 DA - 2019// TI - Mycotoxin risks under a climate change scenario in Europe JO - Trends Food Sci Technol VL - 84 UR - https://doi.org/10.1016/j.tifs.2018.03.008 DO - 10.1016/j.tifs.2018.03.008 ID - Moretti2019 ER - TY - JOUR AU - Gruber-Dorninger, C. AU - Novak, B. AU - Nagl, V. AU - Berthiller, F. PY - 2017 DA - 2017// TI - Emerging mycotoxins: beyond traditionally determined food contaminants JO - J Agric Food Chem VL - 65 UR - https://doi.org/10.1021/acs.jafc.6b03413 DO - 10.1021/acs.jafc.6b03413 ID - Gruber-Dorninger2017 ER - TY - JOUR AU - Smith, M. C. AU - Madec, S. AU - Coton, E. AU - Hymery, N. PY - 2016 DA - 2016// TI - Natural co-occurrence of mycotoxins in foods and feeds and their in vitro combined toxicological effects JO - Toxins (Basel). VL - 8 UR - https://doi.org/10.3390/toxins8040094 DO - 10.3390/toxins8040094 ID - Smith2016 ER - TY - JOUR AU - Meyer, V. PY - 2008 DA - 2008// TI - Genetic engineering of filamentous fungi—progress, obstacles and future trends JO - Biotechnol Adv VL - 26 UR - https://doi.org/10.1016/j.biotechadv.2007.12.001 DO - 10.1016/j.biotechadv.2007.12.001 ID - Meyer2008 ER - TY - JOUR AU - Goffeau, A. AU - Barrell, B. G. AU - Bussey, H. AU - Davis, R. W. AU - Dujon, B. AU - Feldmann, H. PY - 1996 DA - 1996// TI - Life with 6000 genes JO - Science VL - 274 ID - Goffeau1996 ER - TY - JOUR AU - Blattner, F. R. AU - Plunkett, G. AU - Bloch, C. A. AU - Perna, N. T. AU - Burland, V. AU - Riley, M. PY - 1997 DA - 1997// TI - The complete genome sequence of Escherichia coli K-12 JO - Science VL - 277 UR - https://doi.org/10.1126/science.277.5331.1453 DO - 10.1126/science.277.5331.1453 ID - Blattner1997 ER - TY - STD TI - Saccharomyces Genome Database. https://www.yeastgenome.org/search?category=colleague&page=0. Accessed 21 Feb 2020. UR - https://www.yeastgenome.org/search?category=colleague&page=0 ID - ref116 ER - TY - STD TI - Gupta A, Xu W, Jaiswal P, Taylor C, Regala J. Domain informational vocabulary extraction experiences with publication pipeline integration and ontology curation. In: Proceedings of the 9th international conference on biological ontology (ICBO 2018), Corvallis, Oregon, USA. http://ceur-ws.org/Vol-2285/ICBO_2018_paper_43.pdf. UR - http://ceur-ws.org/Vol-2285/ICBO_2018_paper_43.pdf ID - ref117 ER - TY - STD TI - FungiDB. Fungal and oomycete genomics resources. https://fungidb.org/fungidb/. Accessed 21 Feb 2020. UR - https://fungidb.org/fungidb/ ID - ref118 ER - TY - STD TI - MycoCosm. The fungal genomics resource. https://mycocosm.jgi.doe.gov/mycocosm/home. Accessed 21 Feb 2020. UR - https://mycocosm.jgi.doe.gov/mycocosm/home ID - ref119 ER - TY - STD TI - EnsemblFungi. https://fungi.ensembl.org/index.html. Accessed 21 Feb 2020. UR - https://fungi.ensembl.org/index.html ID - ref120 ER - TY - STD TI - ClinEpiDB. Clinical Epidemiology Resources. https://clinepidb.org. Accessed 21 Feb 2020. UR - https://clinepidb.org ID - ref121 ER - TY - JOUR AU - Ruhamankaka, E. AU - Brunk, B. P. AU - Dorsey, G. AU - Harb, O. S. AU - Helb, D. A. AU - Judkins, J. PY - 2019 DA - 2019// TI - ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies JO - Gates Open Res. VL - 3 UR - https://doi.org/10.12688/gatesopenres.13087.1 DO - 10.12688/gatesopenres.13087.1 ID - Ruhamankaka2019 ER - TY - STD TI - HostDB. https://hostdb.org. Accessed 21 Feb 2020. UR - https://hostdb.org ID - ref123 ER - TY - STD TI - MicrobiomeDB. A microbiome resource. https://microbiomedb.org. Accessed 21 Feb 2020. UR - https://microbiomedb.org ID - ref124 ER - TY - JOUR AU - Basenko, E. Y. AU - Pulman, J. A. AU - Shanmugasundram, A. AU - Harb, O. S. AU - Crouch, K. AU - Starns, D. PY - 2018 DA - 2018// TI - FungiDB: an integrated bioinformatic resource for fungi and oomycetes JO - J Fungi (Basel). VL - 4 UR - https://doi.org/10.3390/jof4010039 DO - 10.3390/jof4010039 ID - Basenko2018 ER - TY - JOUR AU - Andersen, M. R. PY - 2014 DA - 2014// TI - Elucidation of primary metabolic pathways in Aspergillus species: orphaned research in characterizing orphan genes JO - Brief Funct Genomics. VL - 13 UR - https://doi.org/10.1093/bfgp/elu029 DO - 10.1093/bfgp/elu029 ID - Andersen2014 ER - TY - JOUR AU - Cherry, J. M. AU - Hong, E. L. AU - Amundsen, C. AU - Balakrishnan, R. AU - Binkley, G. AU - Chan, E. T. PY - 2012 DA - 2012// TI - Saccharomyces genome database: the genomics resource of budding yeast JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1029 DO - 10.1093/nar/gkr1029 ID - Cherry2012 ER - TY - JOUR AU - Schäpe, P. AU - Kwon, M. J. AU - Baumann, B. AU - Gutschmann, B. AU - Jung, S. AU - Lenz, S. PY - 2019 DA - 2019// TI - Updating genome annotation for the microbial cell factory Aspergillus niger using gene co-expression networks JO - Nucleic Acids Res VL - 47 UR - https://doi.org/10.1093/nar/gky1183 DO - 10.1093/nar/gky1183 ID - Schäpe2019 ER - TY - JOUR AU - Steinbiss, S. AU - Silva-Franco, F. AU - Brunk, B. AU - Foth, B. AU - Hertz-Fowler, C. AU - Berriman, M. PY - 2016 DA - 2016// TI - Companion: a web server for annotation and analysis of parasite genomes JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkw292 DO - 10.1093/nar/gkw292 ID - Steinbiss2016 ER - TY - JOUR AU - Dunn, N. A. AU - Unni, D. R. AU - Diesh, C. AU - Munoz-Torres, M. AU - Harris, N. L. AU - Yao, E. PY - 2019 DA - 2019// TI - Apollo: democratizing genome annotation JO - PLoS Comput Biol VL - 15 UR - https://doi.org/10.1371/journal.pcbi.1006790 DO - 10.1371/journal.pcbi.1006790 ID - Dunn2019 ER - TY - STD TI - VEuPathDB. https://veupathdb.org/. Accessed 21 Feb 2020. UR - https://veupathdb.org/ ID - ref131 ER - TY - JOUR AU - Vanegas, K. G. AU - Jarczynska, Z. D. AU - Strucko, T. AU - Mortensen, U. H. PY - 2019 DA - 2019// TI - Cpf1 enables fast and efficient genome editing in Aspergilli JO - Fungal Biol Biotechnol. VL - 6 UR - https://doi.org/10.1186/s40694-019-0069-6 DO - 10.1186/s40694-019-0069-6 ID - Vanegas2019 ER - TY - JOUR AU - Kwon, M. J. AU - Schütze, T. AU - Spohner, S. AU - Haefner, S. AU - Meyer, V. PY - 2019 DA - 2019// TI - Practical guidance for the implementation of the CRISPR genome editing tool in filamentous fungi JO - Fungal Biol Biotechnol. VL - 6 UR - https://doi.org/10.1186/s40694-019-0079-4 DO - 10.1186/s40694-019-0079-4 ID - Kwon2019 ER - TY - JOUR AU - Shapaval, V. AU - Brandenburg, J. AU - Blomqvist, J. AU - Tafintseva, V. AU - Passoth, V. AU - Sandgren, M. PY - 2019 DA - 2019// TI - Biochemical profiling, prediction of total lipid content and fatty acid profile in oleaginous yeasts by FTIR spectroscopy JO - Biotechnol Biofuels VL - 12 UR - https://doi.org/10.1186/s13068-019-1481-0 DO - 10.1186/s13068-019-1481-0 ID - Shapaval2019 ER - TY - JOUR AU - Tolbert, A. AU - Ragauskas, A. J. PY - 2017 DA - 2017// TI - Advances in understanding the surface of lignocellulosic biomass via time-of-flight secondary ion mass spectrometry JO - Energy Sci Eng. VL - 5 UR - https://doi.org/10.1002/ese3.144 DO - 10.1002/ese3.144 ID - Tolbert2017 ER - TY - JOUR AU - Millet, L. J. AU - Aufrecht, J. AU - Labbé, J. AU - Uehling, J. AU - Vilgalys, R. AU - Estes, M. L. PY - 2019 DA - 2019// TI - Increasing access to microfluidics for studying fungi and other branched biological structures JO - Fungal Biol Biotechnol. VL - 6 UR - https://doi.org/10.1186/s40694-019-0071-z DO - 10.1186/s40694-019-0071-z ID - Millet2019 ER - TY - JOUR AU - Schmideder, S. AU - Barthel, L. AU - Friedrich, T. AU - Thalhammer, M. AU - Kovačević, T. AU - Niessen, L. PY - 2019 DA - 2019// TI - An X-ray microtomography-based method for detailed analysis of the three-dimensional morphology of fungal pellets JO - Biotechnol Bioeng VL - 116 UR - https://doi.org/10.1002/bit.26956 DO - 10.1002/bit.26956 ID - Schmideder2019 ER - TY - JOUR AU - Schmideder, S. AU - Barthel, L. AU - Müller, H. AU - Meyer, V. AU - Briesen, H. PY - 2019 DA - 2019// TI - From three-dimensional morphology to effective diffusivity in filamentous fungal pellets JO - Biotechnol Bioeng VL - 116 UR - https://doi.org/10.1002/bit.27166 DO - 10.1002/bit.27166 ID - Schmideder2019 ER - TY - JOUR AU - Horta, M. A. C. AU - Thieme, N. AU - Gao, Y. AU - Burnum-Johnson, K. E. AU - Nicora, C. D. AU - Gritsenko, M. A. PY - 2019 DA - 2019// TI - Broad substrate-specific phosphorylation events are associated with the initial stage of plant cell wall recognition in Neurospora crassa JO - Front Microbiol. VL - 10 UR - https://doi.org/10.3389/fmicb.2019.02317 DO - 10.3389/fmicb.2019.02317 ID - Horta2019 ER - TY - STD TI - Weiss, B. The SEMI international standards program—history, successes and lessons learned to address compound semiconductor manufacturing challenges. In: 2006 International Conference on Compound Semiconductor Manufacturing Technology (CS MANTECH, 2006). p. 55–58. https://csmantech.org/OldSite/Digests/2006/2006%20Digests/4A.pdf. Accessed 5 Dec 2019. UR - https://csmantech.org/OldSite/Digests/2006/2006%20Digests/4A.pdf ID - ref140 ER - TY - STD TI - Williams GW. The USDA Forest Service: the first century. 2005. https://www.fs.fed.us/sites/default/files/media/2015/06/The_USDA_Forest_Service_TheFirstCentury.pdf. Accessed 5 Dec 2019. UR - https://www.fs.fed.us/sites/default/files/media/2015/06/The_USDA_Forest_Service_TheFirstCentury.pdf ID - ref141 ER - TY - STD TI - Prestemon JP, Wear DN, Foster MO. The global position of the U.S. forest products industry. US Dep Agric For Serv South Res Stn e-General Tech Rep. SRS-204, 2015:1–24. ID - ref142 ER - TY - JOUR AU - Endy, D. PY - 2005 DA - 2005// TI - Foundations for engineering biology JO - Nature VL - 438 UR - https://doi.org/10.1038/nature04342 DO - 10.1038/nature04342 ID - Endy2005 ER - TY - JOUR AU - Mutalik, V. K. AU - Guimaraes, J. C. AU - Cambray, G. AU - Lam, C. AU - Christoffersen, M. J. AU - Mi, Q. A. PY - 2013 DA - 2013// TI - Precise and reliable gene expression via standard transcription and translation initiation elements JO - Nat Methods VL - 10 UR - https://doi.org/10.1038/nmeth.2404 DO - 10.1038/nmeth.2404 ID - Mutalik2013 ER - TY - JOUR AU - Kahl, L. AU - Molloy, J. AU - Patron, N. AU - Matthewman, C. AU - Haseloff, J. AU - Grewal, D. PY - 2018 DA - 2018// TI - Opening options for material transfer JO - Nat Biotechnol VL - 36 UR - https://doi.org/10.1038/nbt.4263 DO - 10.1038/nbt.4263 ID - Kahl2018 ER - TY - STD TI - Streiff L. Enzyme toolkit made at Stanford helps make biotechnology globally accessible. Stanford News. 2019. https://news.stanford.edu/2019/11/22/enzyme-toolkit-makes-biotechnology-globally-accessible/. Accessed 5 Dec 2019. UR - https://news.stanford.edu/2019/11/22/enzyme-toolkit-makes-biotechnology-globally-accessible/ ID - ref146 ER - TY - JOUR PY - 2018 DA - 2018// JO - Nat Methods VL - 15 UR - https://doi.org/10.1038/s41592-018-0035-x DO - 10.1038/s41592-018-0035-x ID - ref147 ER - TY - JOUR AU - Coxon, C. H. AU - Longstaff, C. AU - Burns, C. PY - 2019 DA - 2019// TI - Applying the science of measurement to biology: why bother? JO - PLoS Biol VL - 17 UR - https://doi.org/10.1371/journal.pbio.3000338 DO - 10.1371/journal.pbio.3000338 ID - Coxon2019 ER - TY - STD TI - Hernandez P. Joint initiative for metrology in biology. NIST 2016. https://www.nist.gov/jimb. Accessed 5 Dec 2019. UR - https://www.nist.gov/jimb ID - ref149 ER - TY - STD TI - Perez R, Luccioni M, Gaut N, Stirling F, Kamakaka R, Adamala KP, et al. Enabling community-based metrology for wood-degrading fungi. bioRxiv. 2019. https://www.biorxiv.org/content/10.1101/815852v1. UR - https://www.biorxiv.org/content/10.1101/815852v1 ID - ref150 ER - TY - JOUR AU - Hillson, N. AU - Caddick, M. AU - Cai, Y. AU - Carrasco, J. A. AU - Chang, M. E. AU - Curach, N. C. PY - 2019 DA - 2019// TI - Building a global alliance of biofoundries JO - Nat Commun. VL - 10 UR - https://doi.org/10.1038/s41467-019-10079-2 DO - 10.1038/s41467-019-10079-2 ID - Hillson2019 ER - TY - JOUR AU - Kitney, R. AU - Adeogun, M. AU - Fujishima, Y. AU - Goñi-Moreno, Á. AU - Johnson, R. AU - Maxon, M. PY - 2019 DA - 2019// TI - Enabling the advanced bioeconomy through public policy supporting biofoundries and engineering biology JO - Trends Biotechnol VL - 37 UR - https://doi.org/10.1016/j.tibtech.2019.03.017 DO - 10.1016/j.tibtech.2019.03.017 ID - Kitney2019 ER - TY - STD TI - Gingko Bioworks. Gingko BioWorks—our foundries. 2019. https://www.ginkgobioworks.com/our-platform/. Accessed 5 Dec 2019. UR - https://www.ginkgobioworks.com/our-platform/ ID - ref153 ER - TY - STD TI - Ecovative Design LLC. Ecovative design—our foundry. 2019. https://ecovativedesign.com/ourfoundry. Accessed 5 Dec 2019. UR - https://ecovativedesign.com/ourfoundry ID - ref154 ER - TY - JOUR AU - Jessop-Fabre, M. M. AU - Sonnenschein, N. PY - 2019 DA - 2019// TI - Improving reproducibility in synthetic biology JO - Front Bioeng Biotechnol. VL - 7 UR - https://doi.org/10.3389/fbioe.2019.00018 DO - 10.3389/fbioe.2019.00018 ID - Jessop-Fabre2019 ER - TY - JOUR AU - Miles, B. AU - Lee, P. L. PY - 2018 DA - 2018// TI - Achieving reproducibility and closed-loop automation in biological experimentation with an IoT-enabled lab of the future JO - SLAS Technol Transl Life Sci Innov. VL - 23 ID - Miles2018 ER - TY - JOUR AU - Fredens, J. AU - Wang, K. AU - Torre, D. AU - Funke, L. F. H. AU - Robertson, W. E. AU - Christova, Y. PY - 2019 DA - 2019// TI - Total synthesis of Escherichia coli with a recoded genome JO - Nature VL - 569 UR - https://doi.org/10.1038/s41586-019-1192-5 DO - 10.1038/s41586-019-1192-5 ID - Fredens2019 ER - TY - JOUR AU - Venet, J. E. AU - Medico, L. AU - Wölfle, A. AU - Schächle, P. AU - Bucher, Y. AU - Appert, D. PY - 2019 DA - 2019// TI - Chemical synthesis rewriting of a bacterial genome to achieve design flexibility and biological functionality JO - Proc Natl Acad Sci USA VL - 116 UR - https://doi.org/10.1073/pnas.1818259116 DO - 10.1073/pnas.1818259116 ID - Venet2019 ER - TY - JOUR AU - Hutchison, C. A. AU - Chuang, R. -. Y. AU - Noskov, V. N. AU - Assad-Garcia, N. AU - Deerinck, T. J. AU - Ellisman, M. H. PY - 2016 DA - 2016// TI - Design and synthesis of a minimal bacterial genome JO - Science UR - https://doi.org/10.1126/science.aad6253 DO - 10.1126/science.aad6253 ID - Hutchison2016 ER - TY - JOUR AU - Richardson, S. M. AU - Mitchell, L. A. AU - Stracquadanio, G. AU - Yang, K. AU - Dymond, J. S. AU - DiCarlo, J. E. PY - 2017 DA - 2017// TI - Design of a synthetic yeast genome JO - Science VL - 355 UR - https://doi.org/10.1126/science.aaf4557 DO - 10.1126/science.aaf4557 ID - Richardson2017 ER - TY - JOUR AU - Calles, J. AU - Justice, I. AU - Brinkley, D. AU - Garcia, A. AU - Endy, D. PY - 2019 DA - 2019// TI - Fail-safe genetic codes designed to intrinsically contain engineered organisms JO - Nucleic Acids Res VL - 47 UR - https://doi.org/10.1093/nar/gkz745 DO - 10.1093/nar/gkz745 ID - Calles2019 ER -