From: Identification of novel citramalate biosynthesis pathways in Aspergillus niger
 | New locus tag | Old locus tag | Gene product | Gene name | Localization | RPKM values | |||
---|---|---|---|---|---|---|---|---|---|
AB1.13 | AB1.13 CAD | AB1.13 #49B | CitB#99 | ||||||
1 | ANI_1_1206064 | An07g09530 | Pyruvate dehydrogenase E1 component subunit alpha | Â | Mito | 319.96 | 296.42 | 259.17 | 203.01 |
1 | ANI_1_622094 | An11g04550 | Pyruvate dehydrogenase E1 component subunit alpha | Â | Mito | 18.21 | 16.89 | 23.09 | 27.18 |
1 | ANI_1_12014 | An01g00100 | Pyruvate dehydrogenase E1 component subunit beta | Â | Mito | 204.86 | 158.00 | 136.09 | 125.15 |
2 | ANI_1_274064 | An07g02180 | Pyruvate dehydrogenase E2 component | Â | Mito | 232.08 | 210.10 | 209.07 | 225.04 |
3 | ANI_1_440184 | An04g02090 | Pyruvate carboxylase | pycA | Cyto | 306.10 | 262.83 | 309.14 | 395.41 |
4 | ANI_1_876084 | An09g06680 | Citrate synthase | citA | Mito | 284.82 | 269.02 | 255.71 | 238.09 |
4 | ANI_1_1474074 | An08g10920 | Citrate synthase | citB | Cyto | 3.05 | 3.10 | 2.87 | 10838.65 |
4 | ANI_1_2950014 | An01g09940 | Citrate synthase | citC | Cyto | 463.10 | 370.88 | 438.08 | 96.44 |
5 | ANI_1_470084 | An09g03870 | Aconitate hydratase | Â | Mito | 56.65 | 37.15 | 45.12 | 50.78 |
5 | ANI_1_3018024 | An02g11040 | Aconitate hydratase | Â | Cyto | 0.04 | 0.04 | 0.00 | 0.00 |
5 | ANI_1_1410074 | An08g10530 | Aconitate hydratase | acoA | Mito | 326.50 | 284.14 | 426.11 | 486.32 |
5 | ANI_1_1808144 | An16g05760 | Aconitate hydratase | Â | Cyto | 1.30 | 1.13 | 1.03 | 2.02 |
5 | ANI_1_578044 | An05g02230 | Aconitate hydratase | Â | Cyto | 2.91 | 7.34 | 6.20 | 11.04 |
5 | ANI_1_1802134 | An15g07730 | Aconitate hydratase | Â | Cyto | 28.75 | 43.79 | 46.11 | 27.81 |
6 | ANI_1_906164 | An18g06760 | Isocitrate dehydrogenase (NAD+) subunit 1 | Â | Mito | 189.71 | 209.47 | 167.93 | 190.84 |
6 | ANI_1_798074 | An08g05580 | Isocitrate dehydrogenase [NAD] subunit 2 | Â | Mito | 165.29 | 175.80 | 165.81 | 151.75 |
6 | ANI_1_3136024 | An02g12430 | Isocitrate dehydrogenase [NADP] | Â | Per | 53.93 | 50.46 | 43.22 | 64.47 |
7 | ANI_1_826184 | An04g04750 | 2-Oxoglutarate dehydrogenase | Â | Mito | 115.53 | 103.38 | 107.27 | 88.87 |
8 | ANI_1_1482094 | An11g11280 | Dihydrolipoyllysine-residue succinyltransferase | Â | Mito | 168.01 | 172.17 | 158.22 | 198.85 |
9 | ANI_1_230154 | An17g01670 | Succinyl-CoA ligase [GDP-forming] subunit alpha | Â | Mito | 264.96 | 249.57 | 263.12 | 194.37 |
9 | ANI_1_58124 | An14g00310 | Succinyl-CoA ligase [GDP-forming] subunit beta | Â | Mito | 277.86 | 256.78 | 249.99 | 212.81 |
10 | ANI_1_1750024 | An02g12770 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Â | Mito | 245.43 | 193.93 | 185.80 | 107.81 |
10 | ANI_1_2706024 | An02g07600 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Â | Mito | 0.47 | 0.35 | 0.79 | 0.95 |
11 | ANI_1_952104 | An12g07850 | Fumarate hydratase | Â | Mito | 121.25 | 107.39 | 124.39 | 128.67 |
12 | ANI_1_12134 | An15g00070 | Malate dehydrogenase | mdhA | Cyto | 402.08 | 426.49 | 462.06 | 636.37 |
12 | ANI_1_268064 | An07g02160 | Malate dehydrogenase | Â | Mito | 500.20 | 510.92 | 572.33 | 565.47 |
12 | ANI_1_2230094 | An11g07190 | Malate dehydrogenase | Â | Cyto | 0.14 | 0.15 | 0.00 | 0.15 |
13 | ANI_1_1256014 | An01g09270 | Isocitrate lyase | acuD | Per | 86.38 | 61.77 | 65.20 | 42.26 |
13 | ANI_1_1336134 | An15g02980 | Isocitrate lyase/malate synthase | Â | Per | 33.76 | 34.75 | 25.03 | 22.66 |
13 | ANI_1_1826104 | An12g05180 | Isocitrate lyase/malate synthase | Â | Cyto | 0.00 | 0.09 | 0.00 | 0.48 |
14 | ANI_1_320134 | An15g01860 | Malate synthase | Â | Per | 112.41 | 98.34 | 72.33 | 34.38 |
15 | ANI_1_2114184 | An04g08220 | l-Lactate dehydrogenase | Â | Mito/Cyto | 0.09 | 0.58 | 0.51 | 0.63 |
16 | ANI_1_1536084 | An09g06220 | PrpD-like protein | Â | Cyto | 0.30 | 0.23 | 0.36 | 0.43 |
16 | ANI_1_2952014 | An01g09950 | PrpD-like protein | Â | Cyto | 552.06 | 456.98 | 383.21 | 165.41 |
16 | ANI_1_2948014 | An01g09930 | PrpD-like protein | Â | Mito | 308.68 | 261.08 | 288.92 | 145.66 |
16 | ANI_1_3352024 | An02g14730 | PrpD-like protein | Â | Cyto | 5.97 | 7.29 | 5.81 | 10.08 |
17 | ANI_1_1432064 | An07g00760 | Itaconyl-CoA transferase | ictA | Mito | 13.07 | 108.35 | 170.34 | 375.89 |
18 | ANI_1_2118064 | An07g09220 | Itaconyl-CoA hydratase | ichA | Mito | 7.32 | 60.28 | 146.61 | 232.65 |
19 | ANI_1_1156014 | An01g08610 | Citramalate-CoA lyase | cclA | Mito | 10.17 | 12.59 | 21.43 | 19.54 |
20 | ANI_1_92174 | An10g00820 | Oxaloacetate acetylhydrolase | oahA | Cyto | 1803.48 | 1122.69 | 323.44 | 9.81 |
20 | ANI_1_2054064 | An07g08390 | Oxaloacetate acetylhydrolase | Â | Mito | 10.41 | 7.31 | 7.55 | 11.70 |
21 | ANI_1_1678104 | An12g03440 | Glucose oxidase | Â | Secreted | 0.66 | 0.84 | 0.21 | 0.23 |
21 | ANI_1_748094 | An11g05580 | Glucose oxidase | Â | Secreted | 1.01 | 1.80 | 1.15 | 0.19 |
21 | ANI_1_1398064 | An07g00450 | Glucose oxidase | Â | Secreted | 1.47 | 0.67 | 0.38 | 1.45 |
21 | ANI_1_1992014 | An01g14740 | Glucose oxidase | goxC | Secreted | 1.25 | 0.70 | 0.56 | 0.20 |
22 | ANI_1_106174 | An10g00900 | Gluconolactonase | Â | Cyto | 1.37 | 2.05 | 1.64 | 3.30 |
22 | ANI_1_254044 | An05g02030 | Gluconolactonase | Â | Cyto/Nucleus | 1.75 | 1.79 | 1.91 | 2.98 |
22 | ANI_1_1902144 | An16g06620 | Gluconolactonase | Â | Secreted | 0.00 | 0.00 | 0.00 | 0.00 |
23 | ANI_1_928084 | An09g00170 | 2-Isopropylmalate synthase | cimA | Cyto | 362.80 | 298.38 | 108.92 | 23.52 |
24 | ANI_1_440024 | An02g03250 | Isopropylmalate isomerase | Â | Cyto | 135.20 | 57.70 | 45.96 | 96.62 |