Skip to main content

Table 1 Genes belonging to secG, geaB, or ageB subnetworks (Fig. 1) with a predicted functional role at either the Golgi or during the TCA cycle

From: Functional exploration of co-expression networks identifies a nexus for modulating protein and citric acid titres in Aspergillus niger submerged culture

GO

Name

ORF code

Predicted function

Golgi associated vesicle membrane (GO:0030660)

copA

An16g02460

COPI complex, alpha subunit

sec26

An08g03270

COPI complex, beta subunit

sec21

An07g06030

COPI complex, gamma subunit

sec27

An02g05870

COPI complex, beta subunit

sec23

An01g04730

COPII complex subunit

ret2

An01g14250

COPI complex, delta subunit

apm1

An07g03200

Mu1-like medium subunit of the AP-1 complex; involved in clathrin-dependent Golgi protein sorting

aplD

An01g02600

Gamma-adaptin; large subunit of the AP-1 complex; involved in clathrin-dependent Golgi protein sorting

Golgi vesicle budding (GO:0048194)

glo3

An16g05370

ADP-ribosylation factor GTPase activating protein; involved in ER-Golgi transport

sec13

An04g00360

COPII complex subunit

sec16

An15g01520

COPII vesicle coat protein required for ER transport vesicle budding as well as in COPII-mediated ER-to-Golgi traffic; interacts with Sec23p, Sec24p and Sec31p

Tricarboxylic acid cycle (GO:0006099)

kgdA

An04g04750

Oxoglutarate dehydrogenase

mdhA

An07g02160

Mitochondrial malate dehydrogenase

idh1

An18g06760

Isocitrate dehydrogenase

idh2

An08g05580

Isocitrate dehydrogenase

ico2

An09g03870

Aconitate hydratase

citA

An09g06680

Citrate synthase

aclA

An11g00530

Cytoplasmic ATP-citrate lyase

kgd2

An11g11280

Dihydrolipoamide S-succinyl transferase

fumR

An12g07850

Fumarate hydratase

aclB

An11g00510

ATP:citrate oxaloacetate lyase

  1. Predicted functions and gene names were taken from either AspDB [28] or SGD [31]