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Table 1 Genes belonging to secG, geaB, or ageB subnetworks (Fig. 1) with a predicted functional role at either the Golgi or during the TCA cycle

From: Functional exploration of co-expression networks identifies a nexus for modulating protein and citric acid titres in Aspergillus niger submerged culture

GONameORF codePredicted function
Golgi associated vesicle membrane (GO:0030660)copAAn16g02460COPI complex, alpha subunit
sec26An08g03270COPI complex, beta subunit
sec21An07g06030COPI complex, gamma subunit
sec27An02g05870COPI complex, beta subunit
sec23An01g04730COPII complex subunit
ret2An01g14250COPI complex, delta subunit
apm1An07g03200Mu1-like medium subunit of the AP-1 complex; involved in clathrin-dependent Golgi protein sorting
aplDAn01g02600Gamma-adaptin; large subunit of the AP-1 complex; involved in clathrin-dependent Golgi protein sorting
Golgi vesicle budding (GO:0048194)glo3An16g05370ADP-ribosylation factor GTPase activating protein; involved in ER-Golgi transport
sec13An04g00360COPII complex subunit
sec16An15g01520COPII vesicle coat protein required for ER transport vesicle budding as well as in COPII-mediated ER-to-Golgi traffic; interacts with Sec23p, Sec24p and Sec31p
Tricarboxylic acid cycle (GO:0006099)kgdAAn04g04750Oxoglutarate dehydrogenase
mdhAAn07g02160Mitochondrial malate dehydrogenase
idh1An18g06760Isocitrate dehydrogenase
idh2An08g05580Isocitrate dehydrogenase
ico2An09g03870Aconitate hydratase
citAAn09g06680Citrate synthase
aclAAn11g00530Cytoplasmic ATP-citrate lyase
kgd2An11g11280Dihydrolipoamide S-succinyl transferase
fumRAn12g07850Fumarate hydratase
aclBAn11g00510ATP:citrate oxaloacetate lyase
  1. Predicted functions and gene names were taken from either AspDB [28] or SGD [31]