TY - JOUR AU - Berg, M. AU - Albang, R. AU - Albermann, K. AU - Badger, J. H. AU - Daran, J. M. AU - Driessen, A. J. M. PY - 2008 DA - 2008// TI - Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum JO - Nat Biotechnol VL - 26 UR - https://doi.org/10.1038/nbt.1498 DO - 10.1038/nbt.1498 ID - Berg2008 ER - TY - JOUR AU - Pickens, L. B. AU - Tang, Y. AU - Chooi, Y. -. H. PY - 2011 DA - 2011// TI - Metabolic engineering for the production of natural products JO - Annu Rev Chem Biomol Eng VL - 2 UR - https://doi.org/10.1146/annurev-chembioeng-061010-114209 DO - 10.1146/annurev-chembioeng-061010-114209 ID - Pickens2011 ER - TY - JOUR AU - Nielsen, J. C. AU - Nielsen, J. PY - 2017 DA - 2017// TI - Development of fungal cell factories for the production of secondary metabolites: linking genomics and metabolism JO - Synth Syst Biotechnol VL - 2 UR - https://doi.org/10.1016/j.synbio.2017.02.002 DO - 10.1016/j.synbio.2017.02.002 ID - Nielsen2017 ER - TY - JOUR AU - O’Connor, S. E. PY - 2015 DA - 2015// TI - Engineering of secondary metabolism JO - Annu Rev Genet VL - 49 UR - https://doi.org/10.1146/annurev-genet-120213-092053 DO - 10.1146/annurev-genet-120213-092053 ID - O’Connor2015 ER - TY - JOUR AU - Jackson, M. AU - Karwowski, J. P. AU - Humphrey, P. E. AU - Kohl, W. L. AU - Barlow, G. J. AU - Tanaka, S. K. PY - 1993 DA - 1993// TI - Calbistrins, novel antifungal agents produced by Penicillium restrictum. I. Production, taxonomy of the producing organism and biological activity JO - J Antibiot (Tokyo) VL - 46 UR - https://doi.org/10.7164/antibiotics.46.34 DO - 10.7164/antibiotics.46.34 ID - Jackson1993 ER - TY - STD TI - Bertizal FK, Dombrowski AW, Helms GL, Horn WS, Jones ETT, Koupal L, et al. JPH08134059 (A)—Cholesterol lowering agent. 1991. ID - ref6 ER - TY - JOUR AU - Bladt, T. T. AU - Durr, C. AU - Knudsen, P. B. AU - Kildgaard, S. AU - Frisvad, J. C. AU - Gotfredsen, C. H. PY - 2013 DA - 2013// TI - Bio-activity and dereplication-based discovery of ophiobolins and other fungal secondary metabolites targeting leukemia cells JO - Molecules VL - 18 UR - https://doi.org/10.3390/molecules181214629 DO - 10.3390/molecules181214629 ID - Bladt2013 ER - TY - JOUR AU - Brill, G. M. AU - Chen, R. H. AU - Rasmussen, R. R. AU - Whittern, D. N. AU - McAlpine, J. B. PY - 1993 DA - 1993// TI - Calbistrins, novel antifungal agents produced by Penicillium restrictum II. Isolation and elucidation of structure JO - J Antibiot (Tokyo) VL - 46 UR - https://doi.org/10.7164/antibiotics.46.39 DO - 10.7164/antibiotics.46.39 ID - Brill1993 ER - TY - JOUR AU - Stewart, M. AU - Capon, R. J. AU - Lacey, E. AU - Tennant, S. AU - Gill, J. H. PY - 2005 DA - 2005// TI - Calbistrin E and two other new metabolites from an Australian isolate of Penicillium striatisporum JO - J Nat Prod VL - 68 UR - https://doi.org/10.1021/np049614y DO - 10.1021/np049614y ID - Stewart2005 ER - TY - JOUR AU - Nielsen, J. C. AU - Grijseels, S. AU - Prigent, S. AU - Ji, B. AU - Dainat, J. AU - Nielsen, K. F. PY - 2017 DA - 2017// TI - Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species JO - Nat Microbiol VL - 2 UR - https://doi.org/10.1038/nmicrobiol.2017.44 DO - 10.1038/nmicrobiol.2017.44 ID - Nielsen2017 ER - TY - JOUR AU - Fujii, Y. AU - Asahara, M. AU - Ichinoe, M. AU - Nakajima, H. PY - 2002 DA - 2002// TI - Fungal melanin inhibitor and related compounds from Penicillium decumbens JO - Phytochemistry VL - 60 UR - https://doi.org/10.1016/S0031-9422(02)00196-6 DO - 10.1016/S0031-9422(02)00196-6 ID - Fujii2002 ER - TY - JOUR AU - Endo, A. AU - Monacolin, K. PY - 1979 DA - 1979// TI - new hypocholesteroleic agent produced by a Monascus species JO - J Antibiot (Tokyo) VL - 32 UR - https://doi.org/10.7164/antibiotics.32.852 DO - 10.7164/antibiotics.32.852 ID - Endo1979 ER - TY - JOUR AU - Alberts, A. W. AU - Chen, J. AU - Kuron, G. AU - Hunt, V. AU - Huff, J. AU - Hoffman, C. PY - 1980 DA - 1980// TI - Mevinolin: a highly potent competitive inhibitor of hydroxymethylglutaryl-coenzyme A reductase and a cholesterol-lowering agent JO - Proc Natl Acad Sci U S A VL - 77 UR - https://doi.org/10.1073/pnas.77.7.3957 DO - 10.1073/pnas.77.7.3957 ID - Alberts1980 ER - TY - JOUR AU - Brown, B. A. G. AU - Srnale, T. C. AU - Pharmaceuticals, B. AU - Park, B. AU - King, T. J. AU - Hasenkamp, R. PY - 1976 DA - 1976// TI - Crystal and molecular structure of compactin, a new antifungal metabolite from Penicillium brevicompactum JO - JCS Perkin VL - 1 UR - https://doi.org/10.1039/p19760001165 DO - 10.1039/p19760001165 ID - Brown1976 ER - TY - JOUR AU - Frisvad, J. C. AU - Filtenborg, O. PY - 1989 DA - 1989// TI - Terverticillate Penicillia: chemotaxonomy and mycotoxin production JO - Mycologia VL - 81 UR - https://doi.org/10.1080/00275514.1989.12025674 DO - 10.1080/00275514.1989.12025674 ID - Frisvad1989 ER - TY - JOUR AU - Endo, A. AU - Kuroda, M. AU - Tsujita, Y. PY - 1976 DA - 1976// TI - ML-236A, ML-236B, and ML-236C, new inhibitors of cholesterogensis produced by Penicillium citrinum JO - J Antibiot (Tokyo) VL - 29 UR - https://doi.org/10.7164/antibiotics.29.1346 DO - 10.7164/antibiotics.29.1346 ID - Endo1976 ER - TY - JOUR AU - Auclair, K. AU - Sutherland, A. AU - Kennedy, J. AU - Witter, D. J. AU - Den, H. e. e. v. e. r. J. P. AU - Hutchinson, C. R. PY - 2000 DA - 2000// TI - Lovastatin nonaketide synthase catalyzes an intramolecular diels—alder reaction of a substrate analogue JO - J Am Chem Soc VL - 1 UR - https://doi.org/10.1021/ja003216+ DO - 10.1021/ja003216+ ID - Auclair2000 ER - TY - JOUR AU - Horn, W. S. AU - Bierilo, K. K. AU - Bills, G. F. AU - Dombrowski, A. W. AU - Helms, G. L. AU - Jones, E. T. PY - 1993 DA - 1993// TI - Characterization of the light- and base-mediated instability of calbistrin A JO - J Nat Prod VL - 56 UR - https://doi.org/10.1021/np50100a018 DO - 10.1021/np50100a018 ID - Horn1993 ER - TY - JOUR AU - Petersen, L. M. AU - Hoeck, C. AU - Frisvad, J. C. AU - Gotfredsen, C. H. AU - Larsen, T. O. PY - 2014 DA - 2014// TI - Dereplication guided discovery of secondary metabolites of mixed biosynthetic origin from Aspergillus aculeatus JO - Molecules VL - 19 UR - https://doi.org/10.3390/molecules190810898 DO - 10.3390/molecules190810898 ID - Petersen2014 ER - TY - JOUR AU - Fukuyama, K. AU - Hamasaki, T. AU - Hatsuda, Y. AU - Hamasaki, T. AU - Nakagomi, T. AU - Fukuyama, K. PY - 1978 DA - 1978// TI - Structure and absolute configuration of versiol, a metabolite from Aspergillus versicolor JO - J Chem Soc Perkin Trans 2 UR - https://doi.org/10.1039/P29780000683 DO - 10.1039/P29780000683 ID - Fukuyama1978 ER - TY - JOUR AU - Kasahara, K. AU - Miyamoto, T. AU - Fujimoto, T. AU - Oguri, H. AU - Tokiwano, T. AU - Oikawa, H. PY - 2010 DA - 2010// TI - Solanapyrone synthase, a possible Diels–Alderase and iterative type I polyketide synthase encoded in a biosynthetic gene cluster from Alternaria solani JO - ChemBioChem VL - 11 UR - https://doi.org/10.1002/cbic.201000173 DO - 10.1002/cbic.201000173 ID - Kasahara2010 ER - TY - JOUR AU - Kakule, T. B. AU - Sardar, D. AU - Lin, Z. AU - Schmidt, E. W. PY - 2013 DA - 2013// TI - Two related pyrrolidinedione synthetase loci in Fusarium heterosporum ATCC 74349 produce divergent metabolites JO - ACS Chem Biol VL - 8 UR - https://doi.org/10.1021/cb400159f DO - 10.1021/cb400159f ID - Kakule2013 ER - TY - JOUR AU - Kato, N. AU - Nogawa, T. AU - Hirota, H. AU - Jang, J. -. H. AU - Takahashi, S. AU - Ahn, J. S. PY - 2015 DA - 2015// TI - A new enzyme involved in the control of the stereochemistry in the decalin formation during equisetin biosynthesis JO - Biochem Biophys Res Commun VL - 460 UR - https://doi.org/10.1016/j.bbrc.2015.03.011 DO - 10.1016/j.bbrc.2015.03.011 ID - Kato2015 ER - TY - JOUR AU - Li, L. AU - Yu, P. AU - Tang, M. -. C. AU - Zou, Y. AU - Gao, S. -. S. AU - Hung, Y. -. S. PY - 2016 DA - 2016// TI - Biochemical characterization of a eukaryotic decalin-forming Diels–Alderase JO - J Am Chem Soc VL - 138 UR - https://doi.org/10.1021/jacs.6b10452 DO - 10.1021/jacs.6b10452 ID - Li2016 ER - TY - JOUR AU - Campbell, C. D. AU - Vederas, J. C. PY - 2010 DA - 2010// TI - Biosynthesis of lovastatin and related metabolites formed by fungal iterative PKS enzymes JO - Biopolymers VL - 93 UR - https://doi.org/10.1002/bip.21428 DO - 10.1002/bip.21428 ID - Campbell2010 ER - TY - JOUR AU - Pohl, C. AU - Kiel, J. A. K. W. AU - Driessen, A. J. M. AU - Bovenberg, R. A. L. AU - Nygård, Y. PY - 2016 DA - 2016// TI - CRISPR/Cas9 based genome editing of Penicillium chrysogenum JO - ACS Synth Biol VL - 5 UR - https://doi.org/10.1021/acssynbio.6b00082 DO - 10.1021/acssynbio.6b00082 ID - Pohl2016 ER - TY - JOUR AU - Yin, W. AU - Keller, N. P. PY - 2011 DA - 2011// TI - Transcriptional regulatory elements in fungal secondary metabolism JO - J Microbiol VL - 49 UR - https://doi.org/10.1007/s12275-011-1009-1 DO - 10.1007/s12275-011-1009-1 ID - Yin2011 ER - TY - JOUR AU - Wiemann, P. AU - Willmann, A. AU - Straeten, M. AU - Kleigrewe, K. AU - Beyer, M. AU - Humpf, H. U. PY - 2009 DA - 2009// TI - Biosynthesis of the red pigment bikaverin in Fusarium fujikuroi: genes, their function and regulation JO - Mol Microbiol VL - 72 UR - https://doi.org/10.1111/j.1365-2958.2009.06695.x DO - 10.1111/j.1365-2958.2009.06695.x ID - Wiemann2009 ER - TY - JOUR AU - Xu, W. AU - Chooi, Y. H. AU - Choi, J. W. AU - Li, S. AU - Vederas, J. C. AU - Silva, N. A. PY - 2013 DA - 2013// TI - LovG: the thioesterase required for dihydromonacolin L release and lovastatin nonaketide synthase turnover in lovastatin biosynthesis JO - Angew Chemie Int Ed VL - 52 UR - https://doi.org/10.1002/anie.201302406 DO - 10.1002/anie.201302406 ID - Xu2013 ER - TY - JOUR AU - Auclair, K. AU - Kennedy, J. AU - Hutchinson, C. R. AU - Vederas, J. C. PY - 2001 DA - 2001// TI - Conversion of cyclic nonaketides to lovastatin and compactin by a lovC deficient mutant of Aspergillus terreus JO - Bioorganic Med Chem Lett VL - 11 UR - https://doi.org/10.1016/S0960-894X(01)00290-6 DO - 10.1016/S0960-894X(01)00290-6 ID - Auclair2001 ER - TY - JOUR AU - Kennedy, J. AU - Auclair, K. AU - Kendrew, S. G. AU - Park, C. AU - Vederas, J. C. AU - Hutchinson, C. R. PY - 1999 DA - 1999// TI - Modulation of polyketide synthase activity by accessory proteins during lovastatin biosynthesis JO - Science (80-) VL - 284 UR - https://doi.org/10.1126/science.284.5418.1368 DO - 10.1126/science.284.5418.1368 ID - Kennedy1999 ER - TY - JOUR AU - Xie, X. AU - Meehan, M. J. AU - Xu, W. AU - Dorrestein, P. C. AU - Tang, Y. PY - 2009 DA - 2009// TI - Acyltransferase mediated polyketide release from a fungal megasynthase JO - J Am Chem Soc VL - 131 UR - https://doi.org/10.1021/ja903203g DO - 10.1021/ja903203g ID - Xie2009 ER - TY - JOUR AU - Petersen, E. I. AU - Valinger, G. AU - Solkner, B. AU - Stubenrauch, G. AU - Schwab, H. PY - 2001 DA - 2001// TI - A novel esterase from Burkholderia gladioli which shows high deacetylation activity on cephalosporins is related to beta-lactamases and DD-peptidases JO - J Biotechnol VL - 89 UR - https://doi.org/10.1016/S0168-1656(01)00284-X DO - 10.1016/S0168-1656(01)00284-X ID - Petersen2001 ER - TY - JOUR AU - Durairaj, P. AU - Malla, S. AU - Nadarajan, S. P. AU - Lee, P. -. G. AU - Jung, E. AU - Park, H. H. AU - Kim, B. -. G. AU - Yun, H. PY - 2015 DA - 2015// TI - Fungal cytochrome P450 monooxygenases of Fusarium oxysporum for the synthesis of ω-hydroxy fatty acids in engineered Saccharomyces cerevisiae JO - Microb Cell Fact VL - 14 UR - https://doi.org/10.1186/s12934-015-0228-2 DO - 10.1186/s12934-015-0228-2 ID - Durairaj2015 ER - TY - JOUR AU - Bowen, C. H. AU - Bonin, J. AU - Kogler, A. AU - Barba-Ostria, C. AU - Zhang, F. PY - 2016 DA - 2016// TI - Engineering Escherichia coli for conversion of glucose to medium- chain ω-hydroxy fatty acids and α, ω-dicarboxylic acids JO - ACS Synth Biol VL - 5 UR - https://doi.org/10.1021/acssynbio.5b00201 DO - 10.1021/acssynbio.5b00201 ID - Bowen2016 ER - TY - JOUR AU - Rojas-Aedo, J. F. AU - Gil-Durán, C. AU - Del-Cid, A. AU - Valdés, N. AU - Álamos, P. AU - Vaca, I. AU - García-Rico, R. O. AU - Levicán, G. AU - Tello, M. AU - Chávez, R. PY - 2017 DA - 2017// TI - The biosynthetic gene cluster for andrastin A in Penicillium roqueforti JO - Front Microbiol VL - 8 UR - https://doi.org/10.3389/fmicb.2017.00813 DO - 10.3389/fmicb.2017.00813 ID - Rojas-Aedo2017 ER - TY - JOUR AU - Fujiia, Y. AU - Asahara, M. AU - Ichinoe, M. AU - Nakajima, H. PY - 2002 DA - 2002// TI - Fungal melanin inhibitor and related compounds from Penicillium decumbens JO - Phytochemistry VL - 60 UR - https://doi.org/10.1016/S0031-9422(02)00196-6 DO - 10.1016/S0031-9422(02)00196-6 ID - Fujiia2002 ER - TY - JOUR AU - Anisimov, M. M. AU - Chaikina, E. L. AU - Afiyatullov, S. S. AU - Zhuravleva, O. I. AU - Klykov, A. G. AU - Kraskovskaja, N. A. AU - Aminin, D. L. PY - 2012 DA - 2012// TI - Decumbenones A–C from marine fungus Aspergillus sulphureus as stimulators of the initial stages of development of agricultural plants JO - Agric Sci VL - 3 ID - Anisimov2012 ER - TY - JOUR AU - Hiruma, K. AU - Gerlach, N. AU - Sacristán, S. AU - Nakano, R. T. AU - Hacquard, S. AU - Kracher, B. AU - Neumann, U. AU - Ramírez, D. AU - Bucher, M. AU - O’Connell, R. J. AU - Schulze-Lefert, P. PY - 2016 DA - 2016// TI - Root endophyte Colletotrichum tofieldiae confers plant fitness benefits that are phosphate status dependent JO - Cell VL - 165 UR - https://doi.org/10.1016/j.cell.2016.02.028 DO - 10.1016/j.cell.2016.02.028 ID - Hiruma2016 ER - TY - JOUR AU - Grijseels, S. AU - Nielsen, J. C. AU - Nielsen, J. AU - Larsen, T. O. AU - Frisvad, J. C. AU - Fog Nielsen, K. PY - 2017 DA - 2017// TI - Physiological characterization of secondary metabolite producing Penicillium cell factories JO - Fungal Biol Biotechnol VL - 4 ID - Grijseels2017 ER - TY - CHAP AU - Kovalchuk, A. AU - Weber, S. S. AU - Nijland, J. G. AU - Bovenberg, R. A. L. AU - Driessen, A. J. M. ED - Bolton, M. ED - Thomma, B. PY - 2012 DA - 2012// TI - Fungal ABC transporter deletion and localization analysis BT - Plant fungal pathogens methods in molecular biology PB - Humana Press CY - New York UR - https://doi.org/10.1007/978-1-61779-501-5_1 DO - 10.1007/978-1-61779-501-5_1 ID - Kovalchuk2012 ER - TY - JOUR AU - de Vries, R. P. AU - Riley, R. AU - Wiebenga, A. AU - Aguilar-Osorio, G. AU - Amillis, S. AU - Uchima, C. A. PY - 2017 DA - 2017// TI - Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus JO - Genome Biol VL - 18 UR - https://doi.org/10.1186/s13059-017-1151-0 DO - 10.1186/s13059-017-1151-0 ID - de Vries2017 ER - TY - JOUR AU - Marchler-Bauer, A. AU - Derbyshire, M. K. AU - Gonzales, N. R. AU - Lu, S. AU - Chitsaz, F. AU - Geer, L. Y. PY - 2015 DA - 2015// TI - CDD: NCBI’s conserved domain database JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1221 DO - 10.1093/nar/gku1221 ID - Marchler-Bauer2015 ER - TY - JOUR AU - Kroken, S. AU - Glass, N. L. AU - Taylor, J. W. AU - Yoder, O. C. AU - Turgeon, B. G. PY - 2003 DA - 2003// TI - Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes JO - Proc Natl Acad Sci VL - 100 UR - https://doi.org/10.1073/pnas.2532165100 DO - 10.1073/pnas.2532165100 ID - Kroken2003 ER - TY - JOUR AU - Letunic, I. AU - Bork, P. PY - 2016 DA - 2016// TI - Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkw290 DO - 10.1093/nar/gkw290 ID - Letunic2016 ER - TY - JOUR AU - Sullivan, M. J. AU - Petty, N. K. AU - Beatson, S. A. PY - 2011 DA - 2011// TI - Easyfig: a genome comparison visualizer JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btr039 DO - 10.1093/bioinformatics/btr039 ID - Sullivan2011 ER - TY - JOUR AU - Kim, D. AU - Pertea, G. AU - Trapnell, C. AU - Pimentel, H. AU - Kelley, R. AU - Salzberg, S. L. PY - 2013 DA - 2013// TI - TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions JO - Genome Biol VL - 14 UR - https://doi.org/10.1186/gb-2013-14-4-r36 DO - 10.1186/gb-2013-14-4-r36 ID - Kim2013 ER - TY - JOUR AU - Liao, Y. AU - Smyth, G. K. AU - Shi, W. PY - 2014 DA - 2014// TI - FeatureCounts: an efficient general purpose program for assigning sequence reads to genomic features JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btt656 DO - 10.1093/bioinformatics/btt656 ID - Liao2014 ER - TY - JOUR AU - Love, M. I. AU - Huber, W. AU - Anders, S. PY - 2014 DA - 2014// TI - Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 JO - Genome Biol VL - 15 UR - https://doi.org/10.1186/s13059-014-0550-8 DO - 10.1186/s13059-014-0550-8 ID - Love2014 ER - TY - JOUR AU - Sigl, C. AU - Handler, M. AU - Sprenger, G. AU - Kurnsteiner, H. AU - Zadra, I. PY - 2010 DA - 2010// TI - A novel homologous dominant selection marker for genetic transformation of Penicillium chrysogenum: overexpression of squalene epoxidase-encoding ergA JO - J Biotechnol VL - 150 UR - https://doi.org/10.1016/j.jbiotec.2010.09.941 DO - 10.1016/j.jbiotec.2010.09.941 ID - Sigl2010 ER - TY - JOUR AU - Weber, E. AU - Engler, C. AU - Gruetzner, R. AU - Werner, S. AU - Marillonnet, S. PY - 2011 DA - 2011// TI - A modular cloning system for standardized assembly of multigene constructs JO - PLoS One. VL - 6 UR - https://doi.org/10.1371/journal.pone.0016765 DO - 10.1371/journal.pone.0016765 ID - Weber2011 ER - TY - JOUR AU - Chari, R. AU - Yeo, N. C. AU - Chavez, A. AU - Church, G. M. PY - 2017 DA - 2017// TI - SgRNA scorer 2.0: a species-independent model to predict CRISPR/Cas9 activity JO - ACS Synth Biol VL - 6 UR - https://doi.org/10.1021/acssynbio.6b00343 DO - 10.1021/acssynbio.6b00343 ID - Chari2017 ER - TY - JOUR AU - Livak, K. J. AU - Schmittgen, T. D. PY - 2001 DA - 2001// TI - Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method JO - Methods VL - 25 UR - https://doi.org/10.1006/meth.2001.1262 DO - 10.1006/meth.2001.1262 ID - Livak2001 ER - TY - JOUR AU - Kildgaard, S. AU - Mansson, M. AU - Dosen, I. AU - Klitgaard, A. AU - Frisvad, J. C. AU - Larsen, T. O. PY - 2014 DA - 2014// TI - Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library JO - Mar Drugs VL - 12 UR - https://doi.org/10.3390/md12063681 DO - 10.3390/md12063681 ID - Kildgaard2014 ER -