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Table 2 Percent increase in upregulated genes in the triplicated chromosomal region of the I-8 strain

From: Translocated duplication of a targeted chromosomal segment enhances gene expression at the duplicated site and results in phenotypic changes in Aspergillus oryzae

COG description Total Up-regulated genes % Duplicated region Up-regulated genes %
[A] RNA processing and modification 176 9 5 8 7 88
[B] Chromatin structure and dynamics 38 3 8 4 3 75
[C] Energy production and conversion 371 42 11 9 5 56
[D] Cell cycle control, cell division, chromosome partitioning 101 13 13 5 5 100
[E] Amino acid transport and metabolism 453 60 13 18 14 78
[F] Nucleotide transport and metabolism 97 11 11 5 5 100
[G] Carbohydrate transport and metabolism 500 70 14 27 24 89
[H] Coenzyme transport and metabolism 133 13 10 4 3 75
[I] Lipid transport and metabolism 314 39 12 12 9 75
[J] Translation, ribosomal structure and biogenesis 277 8 3 6 6 100
[K] Transcription 180 10 6 9 8 89
[L] Replication, recombination and repair 172 14 8 7 5 71
[M] Cell wall/membrane/envelope biogenesis 98 10 10 5 3 60
[N] Cell motility 2 0 0 0 0 0
[O] Posttranslational modification, protein turnover, chaperones 390 21 5 12 10 83
[P] Inorganic ion transport and metabolism 195 18 9 9 4 44
[Q] Secondary metabolites biosynthesis, transport and catabolism 447 54 12 9 5 56
[R] General function prediction only 1370 138 10 51 24 47
[S] Function unknown 333 29 9 16 14 88
[T] Signal transduction mechanisms 310 21 7 8 3 38
[U] Intracellular trafficking, secretion, and vesicular transport 241 10 4 9 7 78
[V] Defense mechanisms 50 11 22 0 0 0
[W] Extracellular structures 3 0 0 0 0 0
[Y] Nuclear structure 6 0 0 0 0 0
[Z] Cytoskeleton 94 12 13 2 2 100
Unannotated 5659 537 9 211 118 56
Total 12,010 1153 10 446 284 64
  1. *p < 0.02 and fold change > 1 indicate upregulated genes
  2. % increase shows the percent ratio of upregulated genes to total genes in the whole genome or that of the genes in the duplicated region