Table 2 Table depicting key statistics of the different models
From: A community-driven reconstruction of the Aspergillus niger metabolic network
Model | iMA873 | iJB1325 | CoReCo | iHL1210 |
|---|---|---|---|---|
Reactions | ||||
Total | 1380 | 2320 | 4917 | 1764 |
Transport | 189 | 447 | 0 | 285 |
Boundary | 0 | 385 | 148 | 189 |
Unbalanced | 40 | 68 | 148 | – |
Annotated | 1013 | 1239 | 0 | – |
No genes | 340 | 604 | 3049 | – |
Evidence for presence | – | 767 | – | – |
Known gene | – | 654 | – | – |
Metabolites | ||||
Total | 1084 | 1818 | 4025 | 1254 |
Annotated | 0 | 1533 | 0 | |
Dead-End | 270 | 295 | 1739 | |
Genes | ||||
Total | 871 | 1325 | 4533 | 1210 |
Verified location | – | 296 | – | – |
Predicted location | – | 107 | ||
Known function | – | 707 | – | – |
Evidences | ||||
Total | – | 3482 | – | – |
Gene-reaction | – | 1677 | – | – |
Metabolite presence | – | 333 | – | – |
Reaction presence | – | 539 | – | – |
Gene-compartment | – | 907 | – | – |
Test cases | ||||
Total | – | 471 | – | 99 |
Passing | – | 373 | – | 83 |
Failing | – | 98 | – | 16 |
References | ||||
Total | 371 | 876 | – | – |