TY - JOUR AU - Papagianni, M. PY - 2004 DA - 2004// TI - Fungal morphology and metabolite production in submerged mycelial processes JO - Biotechnol Adv VL - 22 UR - https://doi.org/10.1016/j.biotechadv.2003.09.005 DO - 10.1016/j.biotechadv.2003.09.005 ID - Papagianni2004 ER - TY - JOUR AU - El-Enshasy, H. A. PY - 2007 DA - 2007// TI - Filamentous fungal cultures—process characteristics, products, and applications JO - Bioprocess Value Added Prod Renew Resour New Technol Appl VL - 9 UR - https://doi.org/10.1016/B978-044452114-9/50010-4 DO - 10.1016/B978-044452114-9/50010-4 ID - El-Enshasy2007 ER - TY - STD TI - Metz B (1976) From pulp to pellet. PhD thesis, Technische Universität Delft, Delft ID - ref3 ER - TY - JOUR AU - Kossen, N. W. F. PY - 2000 DA - 2000// TI - The morphology of filamentous fungi JO - Adv Biochem Eng Biotechnol VL - 70 ID - Kossen2000 ER - TY - STD TI - Meyer V, Fiedler M, Mitsche BH, King R (2014) The cell factory Aspergillus enters the Big Data era: opportunities and challenges for optimizing product formation. Adv Biochem Eng Biotechnol. doi:10.1007/10_2014_297 ID - ref5 ER - TY - JOUR AU - Cohen, D. PY - 1967 DA - 1967// TI - Computer simulation of biological pattern generation processes JO - Nature VL - 216 UR - https://doi.org/10.1038/216246a0 DO - 10.1038/216246a0 ID - Cohen1967 ER - TY - JOUR AU - Megee, R. D. AU - Kinoshita, S. AU - Fredrickson, A. G. AU - Tsuchiya, H. M. PY - 1970 DA - 1970// TI - Differentiation and product formation in molds JO - Biotechnol Bioeng VL - 12 UR - https://doi.org/10.1002/bit.260120507 DO - 10.1002/bit.260120507 ID - Megee1970 ER - TY - JOUR AU - Edelstein, L. PY - 1982 DA - 1982// TI - The propagation of fungal colonies: a model for tissue growth JO - J Theor Biol VL - 98 UR - https://doi.org/10.1016/0022-5193(82)90146-1 DO - 10.1016/0022-5193(82)90146-1 ID - Edelstein1982 ER - TY - STD TI - Prosser JI (1995) Mathematical modelling of fungal growth. In: The Growing Fungus. Springer, pp 319–335 ID - ref9 ER - TY - JOUR AU - Tough, A. J. AU - Prosser, J. I. PY - 1996 DA - 1996// TI - Experimental verification of a mathematical model for pelleted growth of Streptomyces coelicolor a3 (2) in submerged batch culture JO - Microbiology VL - 142 UR - https://doi.org/10.1099/13500872-142-3-639 DO - 10.1099/13500872-142-3-639 ID - Tough1996 ER - TY - JOUR AU - King, R. PY - 1998 DA - 1998// TI - Mathematical modelling of the morphology of streptomyces species JO - Adv Biochem Eng Biotechnol VL - 60 ID - King1998 ER - TY - JOUR AU - Lejeune, R. AU - Baron, G. V. PY - 1997 DA - 1997// TI - Simulation of growth of a filamentous fungus in 3 dimensions JO - Biotechnol Bioeng VL - 53 UR - https://doi.org/3.0.CO;2-P DO - 3.0.CO;2-P ID - Lejeune1997 ER - TY - JOUR AU - Davidson, F. A. PY - 2007 DA - 2007// TI - Mathematical modelling of mycelia: a question of scale JO - Fungal Biol Rev VL - 21 UR - https://doi.org/10.1016/j.fbr.2007.02.005 DO - 10.1016/j.fbr.2007.02.005 ID - Davidson2007 ER - TY - JOUR AU - Krull, R. AU - Cordes, C. AU - Horn, H. AU - Kampen, I. AU - Kwade, A. AU - Neu, T. R. PY - 2010 DA - 2010// TI - Morphology of filamentous fungi: Linking cellular biology to process engineering using Aspergillus niger JO - Adv Biochem Eng Biotechnol VL - 121 ID - Krull2010 ER - TY - JOUR AU - Celler, K. AU - Picioreanu, C. AU - Loosdrecht, M. C. M. AU - Wezel, G. P. PY - 2012 DA - 2012// TI - Structured morphological modeling as a framework for rational strain design of Streptomyces species JO - Anton Leeuw Int J G VL - 102 UR - https://doi.org/10.1007/s10482-012-9760-9 DO - 10.1007/s10482-012-9760-9 ID - Celler2012 ER - TY - JOUR AU - Davidson, F. A. AU - Boswell, G. P. AU - Fischer, M. W. F. AU - Heaton, L. AU - Hofstadler, D. AU - Roper, M. PY - 2011 DA - 2011// TI - Mathematical modelling of fungal growth and function JO - IMA Fungus VL - 2 UR - https://doi.org/10.5598/imafungus.2011.02.01.06 DO - 10.5598/imafungus.2011.02.01.06 ID - Davidson2011 ER - TY - STD TI - Hopkins SM (2012) A hybrid mathematical model of fungal mycelia: tropisms, polarised growth and application to colony competition. PhD thesis, University of Glamorgan ID - ref17 ER - TY - STD TI - Nielsen J, Villadsen J (1994) Morphologically Structured Models. In: Bioreaction Engineering Principles. Springer, pp 229–269 ID - ref18 ER - TY - JOUR AU - Yang, H. AU - King, R. AU - Reichl, U. AU - Gilles, E. D. PY - 1992 DA - 1992// TI - Mathematical model for apical growth, septation, and branching of mycelial microorganisms JO - Biotechnol Bioeng VL - 39 UR - https://doi.org/10.1002/bit.260390109 DO - 10.1002/bit.260390109 ID - Yang1992 ER - TY - JOUR AU - Meškauskas, A. AU - Fricker, M. D. AU - Moore, D. PY - 2004 DA - 2004// TI - Simulating colonial growth of fungi with the neighbour-sensing model of hyphal growth JO - Mycol Res VL - 108 UR - https://doi.org/10.1017/S0953756204001261 DO - 10.1017/S0953756204001261 ID - Meškauskas2004 ER - TY - JOUR AU - Boswell, G. P. AU - Jacobs, H. AU - Ritz, K. AU - Gadd, G. M. AU - Davidson, F. A. PY - 2007 DA - 2007// TI - The development of fungal networks in complex environments JO - B Math Biol VL - 69 UR - https://doi.org/10.1007/s11538-005-9056-6 DO - 10.1007/s11538-005-9056-6 ID - Boswell2007 ER - TY - JOUR AU - Coradin, J. H. AU - Braun, A. AU - Viccini, G. AU - Krieger, N. AU - Mitchell, D. A. PY - 2011 DA - 2011// TI - A three-dimensional discrete lattice-based system for modeling the growth of aerial hyphae of filamentous fungi on solid surfaces: a tool for investigating micro-scale phenomena in solid-state fermentation JO - Biochem Eng J VL - 54 UR - https://doi.org/10.1016/j.bej.2011.02.012 DO - 10.1016/j.bej.2011.02.012 ID - Coradin2011 ER - TY - JOUR AU - Boswell, G. P. AU - Davidson, F. A. PY - 2012 DA - 2012// TI - Modelling hyphal networks JO - Fungal Biol Rev VL - 26 UR - https://doi.org/10.1016/j.fbr.2012.02.002 DO - 10.1016/j.fbr.2012.02.002 ID - Boswell2012 ER - TY - JOUR AU - Heaton, L. AU - Obara, B. AU - Grau, V. AU - Jones, N. AU - Nakagaki, T. AU - Boddy, L. PY - 2012 DA - 2012// TI - Analysis of fungal networks JO - Fungal Biol Rev VL - 26 UR - https://doi.org/10.1016/j.fbr.2012.02.001 DO - 10.1016/j.fbr.2012.02.001 ID - Heaton2012 ER - TY - JOUR AU - Nieminen, L. AU - Webb, S. AU - Smith, M. C. M. AU - Hoskisson, P. A. PY - 2013 DA - 2013// TI - A flexible mathematical model platform for studying branching networks: experimentally validated using the model actinomycete. Streptomyces coelicolor JO - PloS one VL - 8 UR - https://doi.org/10.1371/journal.pone.0054316 DO - 10.1371/journal.pone.0054316 ID - Nieminen2013 ER - TY - STD TI - Nielsen J (1992) Modelling the growth of filamentous fungi. In: Fiechter A (ed) Adv Biochem Eng Biotechnol, vol 46. Springer, pp 187–223 ID - ref26 ER - TY - JOUR AU - Bartnicki-Garcia, S. AU - Hergert, F. AU - Gierz, G. PY - 1989 DA - 1989// TI - Computer simulation of fungal morphogenesis and the mathematical basis for hyphal (tip) growth JO - Protoplasma VL - 153 UR - https://doi.org/10.1007/BF01322464 DO - 10.1007/BF01322464 ID - Bartnicki-Garcia1989 ER - TY - JOUR AU - Gierz, G. AU - Bartnicki-Garcia, S. PY - 2001 DA - 2001// TI - A three-dimensional model of fungal morphogenesis based on the vesicle supply center concept JO - J Theor Biol VL - 208 UR - https://doi.org/10.1006/jtbi.2000.2209 DO - 10.1006/jtbi.2000.2209 ID - Gierz2001 ER - TY - JOUR AU - Tindemans, S. H. AU - Kern, N. AU - Mulder, B. M. PY - 2006 DA - 2006// TI - The diffusive vesicle supply center model for tip growth in fungal hyphae JO - J Theor Biol VL - 238 UR - https://doi.org/10.1016/j.jtbi.2005.07.004 DO - 10.1016/j.jtbi.2005.07.004 ID - Tindemans2006 ER - TY - JOUR AU - Goriely, A. AU - Tabor, M. PY - 2003 DA - 2003// TI - Biomechanical models of hyphal growth in actinomycetes JO - J Theor Biol VL - 222 UR - https://doi.org/10.1016/S0022-5193(03)00029-8 DO - 10.1016/S0022-5193(03)00029-8 ID - Goriely2003 ER - TY - JOUR AU - Boudaoud, A. PY - 2003 DA - 2003// TI - Growth of walled cells: From shells to vesicles JO - Phys Rev Lett VL - 91 UR - https://doi.org/10.1103/PhysRevLett.91.018104 DO - 10.1103/PhysRevLett.91.018104 ID - Boudaoud2003 ER - TY - JOUR AU - Caballero-Lima, D. AU - Kaneva, I. N. AU - Watton, S. P. AU - Sudbery, P. E. AU - Craven, C. J. PY - 2013 DA - 2013// TI - The spatial distribution of the exocyst and actin cortical patches is sufficient to organize hyphal tip growth JO - Eukaryot cell VL - 12 UR - https://doi.org/10.1128/EC.00085-13 DO - 10.1128/EC.00085-13 ID - Caballero-Lima2013 ER - TY - JOUR AU - Sugden, K. E. P. AU - Evans, M. R. AU - Poon, W. C. K. AU - Read, N. D. PY - 2007 DA - 2007// TI - Model of hyphal tip growth involving microtubule-based transport JO - Phys Rev E VL - 75 UR - https://doi.org/10.1103/PhysRevE.75.031909 DO - 10.1103/PhysRevE.75.031909 ID - Sugden2007 ER - TY - JOUR AU - Heaton, L. M. AU - López, E. AU - Maini, P. K. AU - Fricker, M. D. AU - Jones, N. S. PY - 2010 DA - 2010// TI - Growth-induced mass flows in fungal networks JO - Proc R Soc Lond Ser B VL - 277 UR - https://doi.org/10.1098/rspb.2010.0735 DO - 10.1098/rspb.2010.0735 ID - Heaton2010 ER - TY - STD TI - Agrawal D, Bernstein P, Bertino E, Davidson S, Dayal U, Franklin M et al (2012) Challenges and opportunities with big data. CRA white paper ID - ref35 ER - TY - JOUR AU - Harris, S. D. AU - Read, N. D. AU - Roberson, R. W. AU - Shaw, B. AU - Seiler, S. AU - Plamann, M. PY - 2005 DA - 2005// TI - Polarisome meets spitzenkörper: microscopy, genetics, and genomics converge JO - Eukaryot Cell VL - 4 UR - https://doi.org/10.1128/EC.4.2.225-229.2005 DO - 10.1128/EC.4.2.225-229.2005 ID - Harris2005 ER - TY - JOUR AU - Riquelme, M. PY - 2013 DA - 2013// TI - Tip growth in filamentous fungi: a road trip to the apex JO - Ann Rev Microbiol VL - 67 UR - https://doi.org/10.1146/annurev-micro-092412-155652 DO - 10.1146/annurev-micro-092412-155652 ID - Riquelme2013 ER - TY - JOUR AU - Lew, R. R. PY - 2005 DA - 2005// TI - Mass flow and pressure-driven hyphal extension in Neurospora crassa JO - Microbiology VL - 151 UR - https://doi.org/10.1099/mic.0.27947-0 DO - 10.1099/mic.0.27947-0 ID - Lew2005 ER - TY - JOUR AU - Lew, R. R. PY - 2011 DA - 2011// TI - How does a hypha grow? The biophysics of pressurized growth in fungi JO - Nat Rev Microbiol VL - 9 UR - https://doi.org/10.1038/nrmicro2591 DO - 10.1038/nrmicro2591 ID - Lew2011 ER - TY - JOUR AU - Bizukojc, M. AU - Ledakowicz, S. PY - 2006 DA - 2006// TI - A kinetic model to predict biomass content for Aspergillus niger germinating spores in the submerged culture JO - Process Biochem VL - 41 UR - https://doi.org/10.1016/j.procbio.2005.11.016 DO - 10.1016/j.procbio.2005.11.016 ID - Bizukojc2006 ER - TY - JOUR AU - Fiddy, C. AU - Trinci, A. P. J. PY - 1976 DA - 1976// TI - Nuclei, septation, branching and growth of Geotrichum candidum JO - J Gen Microbiol VL - 97 UR - https://doi.org/10.1099/00221287-97-2-185 DO - 10.1099/00221287-97-2-185 ID - Fiddy1976 ER - TY - JOUR AU - Mouriño-Pérez, R. R. AU - Roberson, R. W. AU - Bartnicki-García, S. PY - 2006 DA - 2006// TI - Microtubule dynamics and organization during hyphal growth and branching in Neurospora crassa JO - Fungal Genet Biol VL - 43 UR - https://doi.org/10.1016/j.fgb.2005.10.007 DO - 10.1016/j.fgb.2005.10.007 ID - Mouriño-Pérez2006 ER - TY - JOUR AU - Ramos-García, S. L. AU - Roberson, R. W. AU - Freitag, M. AU - Bartnicki-García, S. AU - Mouriño-Pérez, R. R. PY - 2009 DA - 2009// TI - Cytoplasmic bulk flow propels nuclei in mature hyphae of Neurospora crassa JO - Eukaryot Cell VL - 8 UR - https://doi.org/10.1128/EC.00062-09 DO - 10.1128/EC.00062-09 ID - Ramos-García2009 ER - TY - JOUR AU - Schunck, T. AU - Herrero, S. AU - Fischer, R. PY - 2011 DA - 2011// TI - The Aspergillus nidulans cenp-e kinesin kipa is able to dimerize and to move processively along microtubules JO - Curr Genet VL - 57 UR - https://doi.org/10.1007/s00294-011-0351-5 DO - 10.1007/s00294-011-0351-5 ID - Schunck2011 ER -