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Table 4 Expression of genes relevant to the non-CAZy response of A. niger to willow

From: RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger

Gene ID   RPKM Fold change b Willow 24 h/glucose 48 h p- value Willow 24 h/glucose 48 h
ATCC 1015 CBS513.88 Gene name (if any) and annotation a (abbreviated) Glucose 48 h Willow 24 h Willow 24 h + Glucose 5 h
Esterases & Lipases      
TID_173684 An02g09690 Ortholog(s) have role in fatty acid catabolic process 0.50 21.96 0.22 98.05 <0.01
TID_51662 An09g00120 fae A, Feruloyl esterase 0.00 13.01 0.06 N/A <0.01
TID_50877 An13g01880 Triacylglycerol lipase 0.00 0.98 0.00 N/A <0.01
TID_210730 An16g01880 lipanl, Lysophospholipase 0.36 62.07 0.72 379.56 <0.01
TID_54865 N/A N/A 0.02 27.43 0.16 2713.67 <0.01
This Study An03g06560 Triacylglycerol lipase 0.00 0.05 0.00 N/A 0.65
TID_53620 An16g03700 Has domain(s) with predicted hydrolase activity 0.05 11.07 14.25 531.54 <0.01
Surface-interacting Proteins      
TID_128530 An07g03340 hyp1, Hydrophobin 4.21 2.30 4.92 1.09 1.00
This Study An08g09880 Putative hydrophobin 1.40 6.33 5.62 9.53 <0.01
TID_188224 An09g00840 Putative cell wall galactomannoprotein 1.31 721.16 2.13 1075.30 <0.01
TID_54125 An18g02730 Ortholog of A. nidulans FGSC A4: AN3257 0.12 3.36 0.73 59.77 <0.01
Enzymes of Carbon and Nitrogen Metabolism      
TID_51997 An01g03740 D-xylose reductase 0.25 27.73 0.25 242.13 <0.01
TID_52460 An02g13750 Ortholog(s) have extracellular region localization 2.60 35.39 6.74 28.40 <0.01
TID_40496 An15g02410 Has domain(s) with predicted nucleotide binding activity 3.71 2.98 4.41 1.72 0.59
TID_40740 An15g05990 Has domain(s) with predicted nucleotide binding..activity 0.25 0.48 0.23 3.69 0.60
TID_56084 An11g10890 Aldose 1-epimerase 2.37 10.48 0.50 9.75 <0.01
Transporters      
TID_56643 An12g09270 Putative lactose permease 0.12 38.20 1.72 676.84 <0.01
TID_38375 An08g04040 transmembrane transporter activity 0.53 7.98 0.84 32.31 <0.01
TID_55668 An06g00560 transmembrane transporter activity 0.19 24.08 0.30 263.55 <0.01
TID_180069 An07g02540 transmembrane transporter activity 0.10 2.05 0.75 43.05 <0.01
TID_197549 An02g08230 transmembrane transporter activity 0.26 18.83 0.09 146.66 <0.01
TID_54095 An18g01700 transmembrane transporter activity 0.09 2.83 0.15 65.55 <0.01
TID_54838 An13g03110 Has domain(s) with predicted role in transmembrane transport 0.35 5.77 0.11 34.61 <0.01
Others      
TID_120161 An18g05500 Ortholog(s) have extracellular region localization 0.64 16.86 0.14 56.34 <0.01
TID_42809 An18g03380 Ortholog(s) have IgE binding activity 0.13 4.23 1.31 69.84 <0.01
TID_180489 An07g00070 Protein of unknown function 2.84 1.66 2.29 1.21 1.00
TID_53013 An11g07040 Ortholog of A. niger ATCC 1015 : 53013-mRNA 0.07 8.61 0.10 233.95 <0.01
TID_43786 An12g02560 N/A 0.13 0.18 0.17 3.20 0.92
  1. aThe annotations here are for the A. niger CBS513.88 strain from the AspGD database [44].
  2. bThe fold changes were calculated by the DESeq statistical analysis package using the normalised read counts.