Skip to main content

Table 4 Expression of genes relevant to the non-CAZy response of A. niger to willow

From: RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger

Gene ID

 

RPKM

Fold change b Willow 24 h/glucose 48 h

p- value Willow 24 h/glucose 48 h

ATCC 1015

CBS513.88

Gene name (if any) and annotation a (abbreviated)

Glucose 48 h

Willow 24 h

Willow 24 h + Glucose 5 h

Esterases & Lipases

     

TID_173684

An02g09690

Ortholog(s) have role in fatty acid catabolic process

0.50

21.96

0.22

98.05

<0.01

TID_51662

An09g00120

fae A, Feruloyl esterase

0.00

13.01

0.06

N/A

<0.01

TID_50877

An13g01880

Triacylglycerol lipase

0.00

0.98

0.00

N/A

<0.01

TID_210730

An16g01880

lipanl, Lysophospholipase

0.36

62.07

0.72

379.56

<0.01

TID_54865

N/A

N/A

0.02

27.43

0.16

2713.67

<0.01

This Study

An03g06560

Triacylglycerol lipase

0.00

0.05

0.00

N/A

0.65

TID_53620

An16g03700

Has domain(s) with predicted hydrolase activity

0.05

11.07

14.25

531.54

<0.01

Surface-interacting Proteins

     

TID_128530

An07g03340

hyp1, Hydrophobin

4.21

2.30

4.92

1.09

1.00

This Study

An08g09880

Putative hydrophobin

1.40

6.33

5.62

9.53

<0.01

TID_188224

An09g00840

Putative cell wall galactomannoprotein

1.31

721.16

2.13

1075.30

<0.01

TID_54125

An18g02730

Ortholog of A. nidulans FGSC A4: AN3257

0.12

3.36

0.73

59.77

<0.01

Enzymes of Carbon and Nitrogen Metabolism

     

TID_51997

An01g03740

D-xylose reductase

0.25

27.73

0.25

242.13

<0.01

TID_52460

An02g13750

Ortholog(s) have extracellular region localization

2.60

35.39

6.74

28.40

<0.01

TID_40496

An15g02410

Has domain(s) with predicted nucleotide binding activity

3.71

2.98

4.41

1.72

0.59

TID_40740

An15g05990

Has domain(s) with predicted nucleotide binding..activity

0.25

0.48

0.23

3.69

0.60

TID_56084

An11g10890

Aldose 1-epimerase

2.37

10.48

0.50

9.75

<0.01

Transporters

     

TID_56643

An12g09270

Putative lactose permease

0.12

38.20

1.72

676.84

<0.01

TID_38375

An08g04040

transmembrane transporter activity

0.53

7.98

0.84

32.31

<0.01

TID_55668

An06g00560

transmembrane transporter activity

0.19

24.08

0.30

263.55

<0.01

TID_180069

An07g02540

transmembrane transporter activity

0.10

2.05

0.75

43.05

<0.01

TID_197549

An02g08230

transmembrane transporter activity

0.26

18.83

0.09

146.66

<0.01

TID_54095

An18g01700

transmembrane transporter activity

0.09

2.83

0.15

65.55

<0.01

TID_54838

An13g03110

Has domain(s) with predicted role in transmembrane transport

0.35

5.77

0.11

34.61

<0.01

Others

     

TID_120161

An18g05500

Ortholog(s) have extracellular region localization

0.64

16.86

0.14

56.34

<0.01

TID_42809

An18g03380

Ortholog(s) have IgE binding activity

0.13

4.23

1.31

69.84

<0.01

TID_180489

An07g00070

Protein of unknown function

2.84

1.66

2.29

1.21

1.00

TID_53013

An11g07040

Ortholog of A. niger ATCC 1015 : 53013-mRNA

0.07

8.61

0.10

233.95

<0.01

TID_43786

An12g02560

N/A

0.13

0.18

0.17

3.20

0.92

  1. aThe annotations here are for the A. niger CBS513.88 strain from the AspGD database [44].
  2. bThe fold changes were calculated by the DESeq statistical analysis package using the normalised read counts.
Back to article page

Fungal Biology and Biotechnology

ISSN: 2054-3085

Contact us