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Table 2 Expression of genes that are relevant to the straw and willow substrate comparison

From: RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger

Gene ID Annotation a RPKM Fold change b straw/willow p- value straw/willow
ATCC 1015   Glucose 48 h Straw 24 h Glucose 48 h Willow 24 h
TID_43785 Feruloyl esterase 0.4 325.9 0.0 3.1 52.6 <0.01
TID_182100 Has domain(s) with predicted hydrolase activity 0.1 16.8 0.0 0.3 28.4 <0.01
TID_51662 faeA - Feruloyl esterase 0.4 396.3 0.0 13.0 13.9 <0.01
TID_47677 Putative xylan beta-xylosidase 0.2 76.0 0.1 9.4 3.7 <0.01
TID_55136 axhA, 1,4-beta-D-arabinoxylan arabinofuranohydrolase 1.7 904.6 0.9 116.3 3.4 0.15
TID_211544 axeA, Acetyl xylan esterase 0.7 562.4 0.6 161.5 1.7 0.83
TID_51478 faeB - Feruloyl esterase 0.3 1.9 0.5 0.5 1.6 0.64
TID_205580 Endoglucanase A 0.1 73.7 0.2 120.6 0.3 <0.05
TID_209376 Heat- and alkaline-stable endoglucanase 0.1 113.6 0.5 210.1 0.3 <0.01
  1. aThe annotations here are for the A. niger CBS513.88 strain from the AspGD database [44].
  2. bThe fold changes were calculated by the DESeq statistical analysis package using the normalised read counts.