Skip to main content

Advertisement

Table 1 Expression of key CAZy-encoding genes that are induced on the willow substrate

From: RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger

Gene ID   Annotation a CAZy family   RPKM  
ATCC 1015 CBS513.88    Glucose 48 h Willow b 24 h Willow 24 h + Glucose 5 h
TID_211595 An12g04610 Lytic polysaccharide monooxygenase AA9 0.6 246.9 1.2
TID_209376 An07g08950 eglB - Heat- and alkaline-stable endoglucanase GH5 0.5 210.1 0.7
TID_211544 An12g05010 axeA - Acetyl xylan esterase CE1 0.6 161.5 0.3
TID_53159 An07g09330 cbhA - Putative cellobiohydrolase GH7 1.0 155.7 1.2
TID_54490 An12g02220 Putative cellulose 1,4-beta-cellobiosidase CBM1, GH6 0.3 145.2 0.4
TID_205580 An01g11670 Endoglucanase A GH5, CBM1 0.2 120.6 1.6
TID_211053 An14g02760 eglA - Putative secreted endoglucanase A GH12 0.4 116.3 1.4
TID_51773 An01g11660 cbhB - Putative cellobiohydrolase B GH7, CBM1 0.3 115.9 10.8
TID_133986 An08g01760 Putative cellulase; exocellobiohydrolase GH6 0.2 54.9 0.5
TID_52011 An01g03340 Xyloglucan-specific endo-beta-1,4-glucanase GH12 0.5 49.3 0.7
  1. aThe annotations here are for the A. niger CBS513.88 strain from the AspGD database [44] with the exception that the erroneous endoglucanase annotation for the AA9 family member was corrected.
  2. bAll of the genes listed here have significantly increased expression on the willow substrate compared to the glucose 48 h control (p < 0.05, DESeq).