From: Evaluation of reference genes for transcript analyses in Komagataella phaffii (Pichia pastoris)
Sample ID | Accession | Platform | Run details | Culturing condition, sampling timepoint | Sample set | References |
---|---|---|---|---|---|---|
GSM4225310: B_10 | SRX7415644 | Illumina NovaSeq 6000 | 13.8G bases, 4.1Â Gb | Glucose / Bench-scale batch growth fermentation at 10Â h | Glucose | [33] |
GSM4225313: M_12 | SRX7415647 | Illumina NovaSeq 6000 | 10.6G bases, 3.2Â Gb | Methanol induction / Methanol growth 12Â h | Methanol | [33] |
GSM4225314: M_24 | SRX7415648 | Illumina NovaSeq 6000 | 11.5G bases, 3.5Â Gb | Methanol induction / Methanol growth 24Â h | Methanol | [33] |
GSM4225311: G_3 | SRX7415645 | Illumina NovaSeq 6000 | 11.4G bases, 3.3Â Gb | Glycerol growth at 3Â h | Glycerol | [33] |
GSM4025512: GS115.0G_A | SRX6691833 | NextSeq 500 | 236.7Â M bases, 96.1Â Mb | 24Â h glycerol | Glycerol | [34] |
GSM4025513: GS115.0G_B | SRX6691834 | NextSeq 500 | 233.7Â M bases, 95Â Mb | 24Â h glycerol | Glycerol | [34] |
GSM4025515: GS115.24G_B | SRX6691836 | NextSeq 500 | 270.2Â M bases, 109.4Â Mb | 48Â h glycerol | Glycerol | [34] |
GSM4225312: GM_2 | SRX7415646 | Illumina NovaSeq 6000 | 14.2G bases, 4.2Â Gb | Glycerol and methanol mixture feed culture at 2Â h | Glycerol and Methanol | [33] |
GSM4025517: GS115.24M_A | SRX6691838 | NextSeq 500 | 206.1 M bases, 83.4 Mb | 24 h glycerol + 24 h methanol | Glycerol and methanol | [34] |
GSM4025518: GS115.24M_B | SRX6691839 | NextSeq 500 | 284.4 M bases, 114.6 Mb | 24 h glycerol + 24 h methanol | Glycerol and methanol | [34] |
GSM5155619: GS115 | SRX10307452 | HiSeq X Ten | 4.7G bases, 1.8Â Gb | YNBE (Yeast Nitrogen Base Ethanol) media for 14Â h | YNBE | [35] |