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Table 1 Media and buffers used in this study

From: Stable overexpression and targeted gene deletion of the causative agent of ash dieback Hymenoscyphus fraxineus

Denomination

Description

Components

AML

Liquid ash medium

50 g ash leaves incl. petioles in ddH2Oa

AMS

Solid ash medium

AML

1.8% (w/v) microagara,b

AMRegL

pH 5.8

Liquid ash medium for regeneration

AML

500 mM sucrose

AMRegS

pH 5.8

Solid ash medium for regeneration

AMRegL

1.8% (w/v) microagarb

AMHygS

Solid ash medium with hygromycin

AMS

100 µg/ml hygromycin Bb

AMGenS

Solid ash medium with geneticin

AMS

375 µg/ml geneticin disulphate (G418) solutionc

Water agar

 

ddH2O

1.8% (w/v) microagarb

MgSO4-buffer

pH 3.5/5.0/5.8

Cell wall digestion

1 M MgSO4

50 mM tri-sodium citrate

STC

pH 8.0

Collection of floating protoplasts

500 mM sucrose

10 mM Tris–HCl

50 mM CaCl2

PEG/STC

pH 8.0

Transformation

STC

40% (w/v) PEG 4000

CTAB-buffer

pH 8.0

gDNA isolation

2% (w/v) CTABd

100 mM Tris–HCl

20 mM EDTA

1.4 M NaCl

TE-buffer/RNase

pH 8.0

gDNA isolation

10 mM Tris–HCl

1 mM EDTA

1 mg/ml RNaseA

  1. aDetails of preparation are given in the section “Culture medium
  2. bDuchefa Biochemie
  3. cBioScience Grade, Carl Roth GmbH
  4. dCetyltrimethylammoniumbromid